Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,714,569 – 4,714,659 |
Length | 90 |
Max. P | 0.905999 |
Location | 4,714,569 – 4,714,659 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -12.56 |
Energy contribution | -12.75 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.21 |
Mean z-score | -2.91 |
Structure conservation index | 0.53 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4714569 90 - 27905053 UGUGGUUCGACUAUAUGUA--------UGUACAUGACGAUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU (((((..((...(((((((--------(((.((((........))))))(((.(((((....))))).))).....))))))))...))..))))).. ( -22.10) >DroSec_CAF1 59772 94 - 1 UGUGGUUCGACUAUAUGUACCUAUAUAUGUACAU----ACAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU (((((..((...((((((((((((((((((....----))))))))...(((.(((((....))))).))))))...)))))))...))..))))).. ( -27.20) >DroEre_CAF1 63437 93 - 1 UGUG-UAUGACUAUAUGCUUAUACACAUAGGUAU----AUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU ((((-((((((.....).)))))))))(((((((----((((.((((....)))).))))))))))).....(((.(((......))).)))...... ( -24.30) >DroYak_CAF1 62380 85 - 1 UGUG-UCUGACUACAUGUAUAUA--------UGU----UUAUAUAUGAGUAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU .(((-(.(((...((((((((..--------...----.))))))))(((((((....)))))))....)))(((.(((......))).))).)))). ( -20.40) >consensus UGUG_UUCGACUAUAUGUAUAUA____UGUACAU____AUAUAUAUGACGAUAUAAGUAUAUGCUUAAAUCAGGCGAUACAUAUUUAUGGCCCGCACU ((((..........((((((........))))))...............(((.(((((....))))).))).(((.(((......))).))))))).. (-12.56 = -12.75 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006