Locus 1621

Sequence ID 3R_DroMel_CAF1
Location 4,712,345 – 4,712,436
Length 91
Max. P 0.893239
window2670

overview

Window 0

Location 4,712,345 – 4,712,436
Length 91
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 78.38
Mean single sequence MFE -14.16
Consensus MFE -9.40
Energy contribution -10.60
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.66
SVM decision value 0.98
SVM RNA-class probability 0.893239
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4712345 91 - 27905053
----CCUGCUUUCCCCCUUUGUAUUCCCCC-CA-----------AAAUGCACUCGCCUCAGUGCAUUUGCGUCUCAGUCGAAUUUCAUUCCGCUUAAACCCACGCCA
----..........................-..-----------(((((((((......)))))))))((((...(((.((((...)))).))).......)))).. ( -14.60)
>DroSim_CAF1 60824 96 - 1
UCCCCCUGUUUUCCCCCGAUAUAUUCCCCCACA-----------AAAUGCACUCGCUUCAGUGCAUUUGCGUCUCAGUCGAAUUUCAUUCCGCUUAAACCCACGCCA
.................................-----------(((((((((......)))))))))((((...(((.((((...)))).))).......)))).. ( -14.60)
>DroEre_CAF1 61179 90 - 1
---CCC--UUUUUCCCCGAUAUAUUCCC-CCCA-----------AAAUGCACUCGCUUCAGUGCAUUUGCGUCUCAGUCGAAUUUCAUUCCGCUUAAACCCACGCCA
---...--....................-....-----------(((((((((......)))))))))((((...(((.((((...)))).))).......)))).. ( -14.60)
>DroYak_CAF1 60128 89 - 1
-----C--CUUUUCGCCGACAUAUUCCCCCCCA-----------AAAUGCACUCGGUUCAGUGCAUUUGCAUCCCAGUCGAAUUUCAUUCUGCUUAAACCCACGCCA
-----.--......((.................-----------(((((((((......))))))))).......(((.((((...)))).))).........)).. ( -12.60)
>DroAna_CAF1 58654 93 - 1
--------------UCUGAGAUACUCUCCCUCAACGCCCCUUGCAAAUGCACACGCUCCAGUGCAUUCUCGCCUCAGUCAAAUUUCAUUCCGCUUAAACCCACGCCA
--------------.(((((...............((.....)).(((((((........))))))).....))))).............................. ( -14.40)
>consensus
____CC__CUUUCCCCCGAUAUAUUCCCCCCCA___________AAAUGCACUCGCUUCAGUGCAUUUGCGUCUCAGUCGAAUUUCAUUCCGCUUAAACCCACGCCA
............................................(((((((((......)))))))))((((...(((.((((...)))).))).......)))).. ( -9.40 = -10.60 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:03 2006