Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,690,229 – 4,690,319 |
Length | 90 |
Max. P | 0.565212 |
Location | 4,690,229 – 4,690,319 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 80.20 |
Mean single sequence MFE | -18.50 |
Consensus MFE | -11.22 |
Energy contribution | -11.47 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.23 |
Mean z-score | -1.61 |
Structure conservation index | 0.61 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4690229 90 - 27905053 AAACCUUUUCAUUCUU-GGUUU-UUUCCC--CCAAACAUCUGCCCCAUUUCACAAUU-UACGCUUUUAAGGGGUGUAUUUGUUUGGCUUAAGCCC ................-(((((-......--(((((((..((((((...........-...........))))))....)))))))...))))). ( -18.25) >DroSec_CAF1 39680 90 - 1 AAACCUUUUCAUUCUU-GGUUU-UUUCCC--GCAAACAUCUGCCCCAUUCCACAAUUUUACG-UUUUAGGGGGUGUAUUUGUUUGGCCUAAGCCC ................-(((((-...((.--(((((.((..(((((.....((........)-).....))))))).)))))..))...))))). ( -17.10) >DroSim_CAF1 43031 92 - 1 AAACCUUUUUAUUCUU-GGUUUUUUUCCC--GCAAACAUCUGCCCCAUUCCAAAAUUUUACGCUUUUAGGGGGUGUAUUUGUUUGGCUUAAGCCC (((((...........-))))).......--..(((((..((((((...((((((........)))).))))).)))..)))))(((....))). ( -16.50) >DroEre_CAF1 42769 89 - 1 AAACUUGUUCAUUCUU-UGUUU-UC-CCC--CUAAACAUCCGCCCCAGUCCACAAUC-AAAGCUUUUAGGGGGUGUAUUUGUUUGGCUUAAGCCC ................-.((((-..-...--(((((((..((((((...........-...........))))))....)))))))...)))).. ( -15.55) >DroYak_CAF1 41767 90 - 1 GAACUUUUCCAUUCUU-UGUUU-UCGCCC--CUAAACAUCUGCCCCAGUCCACAAUG-AACGCUUUUAGGGGGUGUAUUUGUUUGGCUUAAGCCC ................-.((((-..(((.--..(((((..((((((.((.(.....)-.)).((....))))).)))..))))))))..)))).. ( -15.80) >DroPer_CAF1 49877 87 - 1 AAACCUUAA--CCCUUUGGUUA-CUGCCCUUCCAUCCAUCCCUCCCAUCCCAC-----UGCCCAUUUAGGGGGUGUAUUUGUUUGGAUUAGGGCC ......(((--((....)))))-..(((((...(((((..(....((((((.(-----((......))))))))).....)..))))).))))). ( -27.80) >consensus AAACCUUUUCAUUCUU_GGUUU_UUUCCC__CCAAACAUCUGCCCCAUUCCACAAUU_UACGCUUUUAGGGGGUGUAUUUGUUUGGCUUAAGCCC ...............................(((((((..((((((.......................))))))....)))))))......... (-11.22 = -11.47 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:02 2006