Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,668,787 – 4,668,881 |
Length | 94 |
Max. P | 0.542068 |
Location | 4,668,787 – 4,668,881 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.48 |
Mean single sequence MFE | -28.87 |
Consensus MFE | -18.83 |
Energy contribution | -19.09 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.25 |
Mean z-score | -2.08 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542068 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4668787 94 - 27905053 AAUCGUGUCCGAGUGGCUAAACAUUCAUGGGUCUUUCAAAGGGCCUGGGCAACAGGUCGCAUAC--------------AAGAGUGUGUAAAAGUAAUGGAAAUGCGGA ..((((.((((((((......)))))......((((.....((((((.....))))))((((((--------------....)))))).))))....)))...)))). ( -27.80) >DroSec_CAF1 18546 94 - 1 AAUCGUGUCCGAGGGGCUAAACAUUCAUGGGUCGUUCAAAGGGCCUGGGCAACAGGUCGCAUAC--------------AAGAGUGUGUAAAAGUAAUGGAAAUGCGGA ..((((.((((((.((((...........)))).)))....((((((.....))))))((((((--------------....)))))).........)))...)))). ( -28.10) >DroSim_CAF1 18728 94 - 1 AAUCGUGUCCGAGUGGCUAAACAUUCAUGGGUCGUUCAAAGGGCCUGGGCAACAGGUCGCAUAC--------------GAGAGUGUGUAAAAGUAAUGGAAAUGCGGA ..((((.((((((((......)))))...............((((((.....))))))((((((--------------....)))))).........)))...)))). ( -30.20) >DroEre_CAF1 18618 92 - 1 AAUCGUGUCCGAGUGGCUACACAUUCAUGGGUCGUCCA-AGGGCCUGGGCAACAGGUCGCAUAC--------------AAGAGUGUGUAA-AAUAGUGGAAAUGCGGA ..((((.((((......(((((((((.((((....)).-..((((((.....)))))).....)--------------).))))))))).-.....))))...)))). ( -31.50) >DroYak_CAF1 19048 93 - 1 AAUCGUGUCCGAGUGGCUAAACAUUCAUGGGUCGUUCA-AGGGAAUGGGCAACAGGUCGCAUAC--------------AAGAGUGUGUAAAAAUAAUGGAAGUGCGGA ..((((.((((((((......)))))...(.((((((.-...)))))).)........((((((--------------....)))))).........)))...)))). ( -23.60) >DroAna_CAF1 22345 107 - 1 AAUCGUGUUCGAGUGAGUGAACGUUCAUGGGUCGUUUG-UGGGCUUGGGCAACAGGUCGCAGUCAGACUGUGGCUCACAAGCAAAUUCAAAAUGAAUUGAAAAACGGA ..(((((((((......)))))((((((.((..(((((-(((((...(....)....(((((.....)))))))))))))))....))...))))))......)))). ( -32.00) >consensus AAUCGUGUCCGAGUGGCUAAACAUUCAUGGGUCGUUCA_AGGGCCUGGGCAACAGGUCGCAUAC______________AAGAGUGUGUAAAAGUAAUGGAAAUGCGGA ..((((.((((((((......)))))...............((((((.....))))))((((((..................)))))).........)))...)))). (-18.83 = -19.09 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:55 2006