Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,662,757 – 4,662,876 |
Length | 119 |
Max. P | 0.985884 |
Location | 4,662,757 – 4,662,876 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 68.70 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -16.23 |
Energy contribution | -19.85 |
Covariance contribution | 3.62 |
Combinations/Pair | 1.04 |
Mean z-score | -2.27 |
Structure conservation index | 0.51 |
SVM decision value | 2.02 |
SVM RNA-class probability | 0.985884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4662757 119 - 27905053 GUAGGACCACUCCCUACUACUACCACGAGCUGCUGCUGCAGAAGAAUCUCUUCGAUUCCAGUCUGAAUCUUCUGCCCCAGCAGCAGCAGCAGCAUCA-GCCGGAUCUGGCCAAGAGCAAG (((((.......)))))...........(((((((((((.((((.....))))(((((......)))))..........))))))))))).((.((.-((((....))))...))))... ( -45.50) >DroSim_CAF1 12716 113 - 1 GUAGGACCACGCCCUACUACUACCACGAGCUCCUGCUGCAGAAGAAUCUCUUCGAUUCCAGUCUCAAUCUUCUGCCCCAGCAGCA---GCAG---CA-GCCGGAUCUGGCCAAGAGCAAG (((((.......)))))...........((((((((((((((.(((((.....)))))...)))........(((....))))))---))))---..-((((....))))...))))... ( -35.70) >DroEre_CAF1 12590 97 - 1 GUAGGACCACGCCCUACUACUACCACGAGCUGCUGCUGCAGAAGAAUCUCUUCGACUCCAGCCUGAAUCUUCUGCCCCAGCAG-AGCAAGAACAGCAA---------------------- (((((.......))))).........(..((((((..((((((((.((................)).))))))))..))))))-..)...........---------------------- ( -30.69) >DroAna_CAF1 16138 92 - 1 GUCGGACUACGCCGUACUACUACCACGAGUUGUUGCUUCAAAAGAACAUCUUCGAUUCGAGUCUGAAUCUGUUG----------------------------GAUCAAAAUAAGAACAAA .(((((((.....(((....)))..(((((((.((.(((....)))))....)))))))))))))).((((((.----------------------------......))).)))..... ( -16.60) >consensus GUAGGACCACGCCCUACUACUACCACGAGCUGCUGCUGCAGAAGAAUCUCUUCGAUUCCAGUCUGAAUCUUCUGCCCCAGCAG_A___GCAG___CA_____GAUCUGGCCAAGAGCAAG (((((.......)))))...........(((((((..((((((((.((.((........))...)).))))))))..))))))).................................... (-16.23 = -19.85 + 3.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:54 2006