Locus 1615

Sequence ID 3R_DroMel_CAF1
Location 4,659,398 – 4,659,500
Length 102
Max. P 0.510871
window2660

overview

Window 0

Location 4,659,398 – 4,659,500
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.09
Mean single sequence MFE -24.00
Consensus MFE -15.98
Energy contribution -17.03
Covariance contribution 1.06
Combinations/Pair 1.17
Mean z-score -1.48
Structure conservation index 0.67
SVM decision value -0.04
SVM RNA-class probability 0.510871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4659398 102 + 27905053
AAGGUGAGAGCGAGUGCAUCAUAUGCAAGUGCUUCAAAUGGGGCGCAUGUAAAUGAUAGCGUCUAAUGGGCCAGAGACACAGGUGGAUAUACACAUAAUCAU
...((....))(((((((((((.((((.(((((((....))))))).)))).))))).))((((..........))))))..(((......)))....)).. ( -28.60)
>DroPse_CAF1 9623 89 + 1
AGGGUGAGAGCGAGUGCAUUAAAUGCAAAUGGUGCAAAUGGGGCACAUGUAAAUGAUAGCGUCUAAUGGGGU----ACA-------UUACACAUAUAAU-A-
...(((...(((.((((......((((.....))))......)))).))).((((...((.((....)).))----.))-------)).))).......-.- ( -16.60)
>DroSec_CAF1 9137 102 + 1
AAGGUGAGAGCGAGUGCAUCAUAUGCAAGUGCUUCAAAUGGGGCGCAUGUAAAUGAUAGCGUCUAAUGGGCCAGGGACACAGGUGGAUAUACACAUAAUCAU
...((....))(((((((((((.((((.(((((((....))))))).)))).))))).))((((..........))))))..(((......)))....)).. ( -28.60)
>DroSim_CAF1 9385 102 + 1
AAGGUGAGAGCGAGUGCAUCAUAUGCAAGUGCUUCAAAUGGGGCGCAUGUAAAUGAUAGCGUCUAAUGGGCCAGGGACACAGAUGGAUAUACACAUAAUCAU
...(((.........(((((((.((((.(((((((....))))))).)))).))))).))(((((.((..(....)...))..)))))...)))........ ( -27.70)
>DroYak_CAF1 9527 91 + 1
AAGGUGAGAGCGAGUGCAUCAUAUGCAAGUGCUGCAAAUGGGGCGCAUGUAAAUGAUAGCGUCUAUUGGGCCAGGGACACAUUUAGAUACA-----------
..(((..((...((((((((((.((((.(((((.(....).))))).)))).))))).))).)).))..)))...................----------- ( -26.00)
>DroPer_CAF1 10642 89 + 1
AGGGUGAGAGCGAGUGCAUUAAAUGCAAAUGGUGCAAAUGGGGCACAUGUAAAUGAUAGCGUCUAAUGGAGU----ACA-------UUACACAUAUAAU-A-
...((....))....((((((..((((....((((.......)))).))))..)))).))((.(((((....----.))-------))).)).......-.- ( -16.50)
>consensus
AAGGUGAGAGCGAGUGCAUCAUAUGCAAGUGCUGCAAAUGGGGCGCAUGUAAAUGAUAGCGUCUAAUGGGCCAGGGACACAG_UGGAUACACACAUAAU_A_
...(((.........(((((((.((((.(((((.(....).))))).)))).))))).))((((..........))))...........))).......... (-15.98 = -17.03 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:53 2006