Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,658,201 – 4,658,294 |
Length | 93 |
Max. P | 0.809005 |
Location | 4,658,201 – 4,658,294 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 87.47 |
Mean single sequence MFE | -41.78 |
Consensus MFE | -31.86 |
Energy contribution | -30.26 |
Covariance contribution | -1.60 |
Combinations/Pair | 1.37 |
Mean z-score | -1.90 |
Structure conservation index | 0.76 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4658201 93 + 27905053 CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCCGGGGUCGCCU ....((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))..((((((....(((((....))))))))))).. ( -45.20) >DroSec_CAF1 7915 93 + 1 CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGUGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCAGGAGUCGCCU (((.((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))))).(((.(((.((((.....)))).))).))). ( -41.30) >DroSim_CAF1 8135 93 + 1 CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG---GCUGCAUGUGGCCAUUGCUGGGUGAACCCGGGGUCGCCU ....((.(((((((((.((((.(((.(..(....)..)))).)))).)))))))---)).))..((((((....(((((....))))))))))).. ( -45.20) >DroYak_CAF1 8337 93 + 1 CAUAGGUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGCGGCGGUG---CCUGCAUGUGGCCAUUGCUGGGUGAACCGGGAGUCGCCU ..((((..((.......(((((...)))))((((((((....))))))))))..---)))).....(((.(((.((((.....)))).))).))). ( -47.20) >DroAna_CAF1 11577 96 + 1 CGUAGUUUCCGUUACUGCCACCGUAUGUGGGCUGCUGCUGUUGCUGCUGCGGCGUCUGUUGCAUGUGUCCGUUGCUGGGAGAGCCAGGAGUAGGCU .(((((.......)))))....(((.(..(((.(((((.((....)).))))))))..))))....(((..((.((((.....)))).))..))). ( -30.00) >consensus CAUAGUUGCCAUUACUUCCGCCGUAGGUGGGCUGCUGCUGCUGCGGUGGUGGUG___GCUGCAUGUGGCCAUUGCUGGGUGAACCAGGAGUCGCCU ..((((...((((....((((.....))))((((((((....))))))))))))...)))).....(((.(((.((((.....)))).))).))). (-31.86 = -30.26 + -1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:51 2006