| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,651,193 – 4,651,310 |
| Length | 117 |
| Max. P | 0.917696 |
| Location | 4,651,193 – 4,651,310 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -15.66 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.57 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.917696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4651193 117 - 27905053 CAAGCUCGUGGCAAGUUAUCUGUUUGAUGACGUCAGUCACCAACUGCUGCCACAUAAAAGAACUUUGUGAUUCA---GUUUAAAUAUUUGAUUACCCUCGAUUAUAAAUUCUUUAAGCCA ...(((.((((((.((((((.....))))))(.((((.....)))))))))))...((((((.(((((((((.(---(..(((........)))..)).))))))))))))))).))).. ( -31.70) >DroSec_CAF1 918 106 - 1 CGAGCUCGUUGCAAGUUAUCUUUUUGAUGACGUCAGUCACCAAGUGCUGCCACAUAAAAGAACUUGGUGAUUCA---GUUUAAAUAUUUGAUUACCCUCGAU-----------UAAGCCA ((((...((..(((((((((.....))))))...(((((((((((.((..........)).)))))))))))..---..........)))...)).))))..-----------....... ( -26.60) >DroSim_CAF1 1112 117 - 1 CGAGCUCGUGGCAAGUUAUCUGUUUGAUGACGUCAGUCACCAACUGCUGCCACAUAAAAGAAUUUGGUGAUUCA---GUUUAAAUAUUUGAUUACCCUCGAUUAUAAAUUCUUUAAGCCA .(.(((.((((((.((((((.....))))))(.((((.....)))))))))))...((((((((((((((((.(---((......))).))))))).........))))))))).)))). ( -32.80) >DroEre_CAF1 909 102 - 1 CGAGUUCGUGGCAAGUUAUCUAUUUGAUGACGUCAGUCACCAGCUGCUGCUACAUAAAAGAACUUAGUCUUU-----AUUUAUAUAUUUGAUUACCAUCAAAUCUA------U------- .(((((((((((..((((((.....))))))....))))).(((....)))........)))))).......-----....(((.(((((((....))))))).))------)------- ( -24.40) >DroYak_CAF1 1114 103 - 1 CGAGCUCGUGGCAAGUUAUCUGCUUGAUGACGUCAGUCACCAGCUGCUGC-ACAUAAAAGAACUUGGUGAUUCAAUAGUUUAAGUAUUUGAUUAACAUUCAUUA---------------- ..((((.(((((..((((((.....))))))....))))).))))....(-(.(((...((((((((....)))..)))))...))).))..............---------------- ( -21.50) >consensus CGAGCUCGUGGCAAGUUAUCUGUUUGAUGACGUCAGUCACCAACUGCUGCCACAUAAAAGAACUUGGUGAUUCA___GUUUAAAUAUUUGAUUACCCUCGAUUAUA______UUAAGCCA .......((((((.((((((.....))))))(.((((.....)))))))))))................................................................... (-15.66 = -15.94 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006