Locus 161

Sequence ID 3R_DroMel_CAF1
Location 812,528 – 812,623
Length 95
Max. P 0.525707
window266

overview

Window 6

Location 812,528 – 812,623
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.82
Mean single sequence MFE -29.10
Consensus MFE -22.58
Energy contribution -21.58
Covariance contribution -1.00
Combinations/Pair 1.30
Mean z-score -1.37
Structure conservation index 0.78
SVM decision value -0.02
SVM RNA-class probability 0.525707
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 812528 95 - 27905053
--CCCUCU--CGUU-----CCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUUGU
--...(((--.((.-----(.((((....((((((((.....(((((((((...)))))))))))))))))..)))).).))))).((((.....))))..... ( -28.70)
>DroVir_CAF1 25430 97 - 1
--CUCUCUACCUCUC-----ACAGGUUAGCGAUAAAUUCCUGGAUGCCUAUAAGGUCGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUUGCCUUUGU
--.....((((((((-----(((((....((((((((.....((((((.........))))))))))))))..)))..))).))).)))).............. ( -20.50)
>DroGri_CAF1 22821 93 - 1
--UUGU---------UUUCUGCAGGUUAGCGAUAAAUUUCUGGAUGCCUAUAAGGUUGGCAUUAUUUAUUGGCCCUGCGUGCAGACGAUAAACUUUGCCUUCGU
--((((---------(.((((((.((..(((((((((.....((((((.........))))))))))))).))...)).)))))).)))))............. ( -25.90)
>DroEre_CAF1 143 96 - 1
CCUCCUCU---GUU-----CCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUCGU
.....(((---((.-----(.((((....((((((((.....(((((((((...)))))))))))))))))..)))).).))))).((((.....))))..... ( -32.50)
>DroWil_CAF1 21935 94 - 1
--UC-UUU--GCCU-----UGCAGGUUAGCGAUAAAUUCUUGGACGCCUAUAAGGUGGGCGUUAUUUAUUGGCCCUGUGUGCAAACGGUGAACUUCGCCUUUGU
--..-(((--((..-----((((((....((((((((.....(((((((((...)))))))))))))))))..)))))).))))).((((.....))))..... ( -31.10)
>DroYak_CAF1 143 94 - 1
--UCCUCU---GUU-----UCCAGGUCGCCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUACAGACGGUGAACUUCGCUUUCGU
--...(((---((.-----..((((..((((((((((.....(((((((((...)))))))))))))))))))))))...))))).((((.....))))..... ( -35.90)
>consensus
__UCCUCU___GUU_____UCCAGGUCAGCGAUAAAUUCCUGGACGCCUACAAGGUGGGCGUUAUUUAUUGGCCCUGCGUGCAGACGGUGAACUUCGCCUUCGU
.....................((((....((((((((.....(((((((((...)))))))))))))))))..))))......((.((((.....)))).)).. (-22.58 = -21.58 +  -1.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:22 2006