Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,651,049 – 4,651,155 |
Length | 106 |
Max. P | 0.754854 |
Location | 4,651,049 – 4,651,155 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -24.03 |
Energy contribution | -24.53 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.52 |
Structure conservation index | 0.77 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754854 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4651049 106 - 27905053 CAUUACAUUGACUAAAUGGACUCACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUAGUGGCUUCAUGCUUGCGAUAGUUGACC ............(((((((......)))))))....(((((.(((.((((((((((((.((((.(((.......)))))))..))))))))))))))))))))... ( -37.10) >DroGri_CAF1 773 90 - 1 ------------UC----UAGUUACCCAUUCAAGGCCAGCUCGUCGGCGAGAAUGGAGAGCUGCACCACGUAGGGAUUGGUGGCCUCGUGCUUGCGAUAGUUGACC ------------..----...............((.(((((.((((.((((....(((.((..(.((.....)).....)..)))))...))))))))))))).)) ( -25.80) >DroSim_CAF1 985 95 - 1 -----------CUAAAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUAGUAGCUUCAUGCUUGCGAUAGUUGACC -----------.(((((((......)))))))....(((((.(((.(((((((((..((((((((((.......)))..))))))))))))))))))))))))... ( -36.10) >DroEre_CAF1 775 105 - 1 CAU-CCAUUGACUACUUUGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGGUUCGUUGCUUCGUGCUUGCGAUAGUUGACC ...-..........((((((.........)))))).(((((.(((.(((((((((((((((.((.((......))))..))).))))))))))))))))))))... ( -29.10) >DroYak_CAF1 980 105 - 1 CAA-GCAUUGACUAGAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGAUUCGUGGCUUCAUGCUUGCGAUAGUUGACC ...-........(((((((......)))))))....(((((.(((.(((((((((..((((..(.((.....)).....)..)))))))))))))))))))))... ( -33.60) >DroMoj_CAF1 747 103 - 1 AGA-GCAUUAACUGAU--UAUUUACCCAUUCAAUGCGAGCUCGUCGGCCAAAAUGGAGAGCUGCACCACAUACGGAUUGGUUGCCUCGUGCUUGCGAUAGUUCACC .((-((......(((.--...........))).(((((((.((.(((((((..((.(....).))((......)).)))))))...)).)))))))...))))... ( -25.00) >consensus CA___CAUUGACUAAAUGGACUUACCCAUUUAAAGCCAGCUCAUCAGCGAGUAUGGAGAGCUGCACCACAUAGGGAUUAGUGGCUUCAUGCUUGCGAUAGUUGACC ....................................(((((.(((.((((((((((..((((((.((......))....))))))))))))))))))))))))... (-24.03 = -24.53 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:46 2006