Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,640,236 – 4,640,346 |
Length | 110 |
Max. P | 0.965418 |
Location | 4,640,236 – 4,640,346 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 80.92 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -19.80 |
Energy contribution | -19.17 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.20 |
Mean z-score | -3.74 |
Structure conservation index | 0.79 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4640236 110 - 27905053 AAACAAUUGUACAUGGCUUUCGUAAAGAAAUUUAUGAAGGCUUUGUAUGAUUAACCAAAAAAA--AAUCCACAAAUUUGUGUUUUUAUUUGC-GUUAU-CACGUAC-AGUUUUUC ....((((((((..((((((((((((....)))))))))))).....((((.(((((((.(((--((..((((....))))))))).)))).-)))))-)).))))-)))).... ( -32.30) >DroGri_CAF1 15015 107 - 1 AAACAAUUGUACACGGCUUUCGUAAAGAAAUUUAUCGAAGCUUUGUAUAAUUAACCAAAAAAAAACAACCUGAUCUUUGUGUUAUUAUUUGC-UUUAUUC---CAACAUUC---- .((((((((((((.((((((.(((((....))))).)))))).)))))))))............((((........))))))).........-.......---........---- ( -20.80) >DroSim_CAF1 12720 109 - 1 AAACAAUUGUACAUGGCUUUCGUAAAGAAAUUUAUUAAAGCUUUGUAUGAUUAACCAAAAA-A--AAUCCUGAAAUUUGUGUUUUUAUUUGC-GUUAU-CACGCAC-AGUUUUUC (((((((..((((.((((((.(((((....))))).)))))).))))..))).......((-(--((..(........)..)))))...(((-((...-.))))).-.))))... ( -24.90) >DroEre_CAF1 12772 108 - 1 AAACAAUUGUACAUGGCUUUCGUAAAGUAAUUUAUUAAAGCUUUGUAUAAUUAACCAAA--AA--AAUCCUCAAAUUUGUGUUUUUAUUUGC-GUUAU-CACGUAC-AGUUUUUC (((((((((((((.((((((.(((((....))))).)))))).)))))))))(((((((--.(--((..(.((....)).)..))).)))).-)))..-.......-.))))... ( -24.10) >DroYak_CAF1 12710 110 - 1 AAACAAUUGUACAUGGCUUUCGUAAAGUAAUUUAUUAAAGCUUUGUAUAAUUAACCAAAAAAA--AAUCCUCAAAUUUGUGUUUUCAUUUGC-GUUAU-CACGUAC-AGUUUUUC (((((((((((((.((((((.(((((....))))).)))))).)))))))))(((((((..((--((..(........)..))))..)))).-)))..-.......-.))))... ( -24.00) >DroAna_CAF1 12587 90 - 1 AAACAAUUGUACACGGCUUUCGUAAAGUGAUUUAUUAAAGCCUUGUAUAAUUAAGAAAAAC--------AACAAAUUUGUGUUUUUAUUUUCCAUUAG----------------- ....(((((((((.((((((.(((((....))))).)))))).)))))))))...((((((--------(.((....)))))))))............----------------- ( -24.40) >consensus AAACAAUUGUACAUGGCUUUCGUAAAGAAAUUUAUUAAAGCUUUGUAUAAUUAACCAAAAAAA__AAUCCUCAAAUUUGUGUUUUUAUUUGC_GUUAU_CACGUAC_AGUUUUUC ....(((((((((.((((((.(((((....))))).)))))).)))))))))............................................................... (-19.80 = -19.17 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:45 2006