Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,623,905 – 4,624,017 |
Length | 112 |
Max. P | 0.978488 |
Location | 4,623,905 – 4,624,017 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 96.88 |
Mean single sequence MFE | -27.16 |
Consensus MFE | -23.92 |
Energy contribution | -24.72 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.88 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4623905 112 + 27905053 AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUAGACUCUUCAACGCUUUUCUUCACU (((((......((.((((((.....))))))((...((((((......))))))...)).))......((((((.......))))))))))).................... ( -24.50) >DroSec_CAF1 22667 112 + 1 AGUCUUUGCCCGCAUGGAGCUUGUUUCUUCAGAAUCGCAAAGAUUCCUCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU .......((..((.(((((.......)))))((...(((((((....)))))))...)).))...(((((((((.......))))))))).........))........... ( -25.70) >DroSim_CAF1 23961 112 + 1 AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU (((((((((.....((((((.....)))))).....)))))))))..............(((........((((.......))))(((((....)))))))).......... ( -27.70) >DroEre_CAF1 23888 112 + 1 AGUCUUUUCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCGACGCGUUUCUCCACU .(((.......((.((((((.....))))))((...((((((......))))))...)).))...(((((((((.......)))))))))......)))............. ( -29.40) >DroYak_CAF1 23752 112 + 1 AGUCUUUGCCCGCAAGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCCACGCUUUUCUUCACU (((((((((((....)).((((.(......).))))))))))))).......((.((..((....(((((((((.......)))))))))..))..)).))........... ( -28.50) >consensus AGUCUUUGCCCGCAUGGAGGUUGUUUCUUCAGAAUCGCAAAGAUUCCCCUUUGUCUGUCAGCAUUUCAAUGGCUUCUGUUUAGCCGUUGACUCUUCAACGCUUUUCUUCACU (((((((((.....((((((.....)))))).....)))))))))....................(((((((((.......)))))))))...................... (-23.92 = -24.72 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:43 2006