Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,617,741 – 4,617,841 |
Length | 100 |
Max. P | 0.606798 |
Location | 4,617,741 – 4,617,841 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -24.60 |
Consensus MFE | -21.46 |
Energy contribution | -23.12 |
Covariance contribution | 1.66 |
Combinations/Pair | 1.10 |
Mean z-score | -1.49 |
Structure conservation index | 0.87 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4617741 100 + 27905053 GAACUGUUAAAUCGAAUUCGAUCACUGGAACGUAACGCGGCUAUAUGGCUAUAUGGCUAUAUGGCCACGAAUUGCCAGUUGGUGGCAGAAGGAGAGAUGG ...((((((.((((....)))).(((((.......((.((((((((((((....)))))))))))).)).....)))))...))))))............ ( -34.60) >DroSec_CAF1 16575 92 + 1 GAACUGUAAAAUCGAAUUCGAUCACUGGAACGUAACGCGGCUAUAUGG--------CUAUAUGGCCACAAAUUGCCAGUCGGUGGCAGAAGGAGAGAUGG ...((((...((((....))))((((((...((((.(.((((((((..--------..)))))))).)...))))...))))))))))............ ( -25.00) >DroSim_CAF1 17862 92 + 1 GAACUGUAAAAUCGAAUUCGAUCACUGGAACGUAACGCGGCUAUAUGG--------CUAUAUGGCCACAAAUUGCCAGUCGGUGGCAGAAGGAGAGAUGG ...((((...((((....))))((((((...((((.(.((((((((..--------..)))))))).)...))))...))))))))))............ ( -25.00) >DroEre_CAF1 17692 84 + 1 GAACUGUAAAAUCGAAUUCGAUCACUGGAACGUAGUGCGGCUA----------------UAUGGCCACAAAUUGCACGUUGUUGGCAGAAAGAGAGAAGA ...((((...((((....))))..(.(.(((((..((.((((.----------------...)))).))......))))).).)))))............ ( -17.00) >DroYak_CAF1 17479 84 + 1 GAACUGUAAAAUCGAAUUCGAUCACUGGAACGUAGUGCGGCUA----------------UAUGGCCACAAAUUGCACGUUGUUCGCAGAGAGAGAGAAGA ................(((..((.((((((((..((((((((.----------------...)))).......))))..))))).))).))..))).... ( -21.41) >consensus GAACUGUAAAAUCGAAUUCGAUCACUGGAACGUAACGCGGCUAUAUGG________CUAUAUGGCCACAAAUUGCCAGUUGGUGGCAGAAGGAGAGAUGG ...((((...((((....))))((((((...((((((.(((((((((((......))))))))))).))..))))...))))))))))............ (-21.46 = -23.12 + 1.66)
Location | 4,617,741 – 4,617,841 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 84.11 |
Mean single sequence MFE | -20.52 |
Consensus MFE | -14.74 |
Energy contribution | -15.90 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.12 |
Mean z-score | -1.68 |
Structure conservation index | 0.72 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4617741 100 - 27905053 CCAUCUCUCCUUCUGCCACCAACUGGCAAUUCGUGGCCAUAUAGCCAUAUAGCCAUAUAGCCGCGUUACGUUCCAGUGAUCGAAUUCGAUUUAACAGUUC ............(((......(((((.(((.((((((.((((.((......)).)))).))))))....))))))))(((((....)))))...)))... ( -25.80) >DroSec_CAF1 16575 92 - 1 CCAUCUCUCCUUCUGCCACCGACUGGCAAUUUGUGGCCAUAUAG--------CCAUAUAGCCGCGUUACGUUCCAGUGAUCGAAUUCGAUUUUACAGUUC ............(((......(((((.(((.((((((.((((..--------..)))).))))))....))))))))(((((....)))))...)))... ( -21.00) >DroSim_CAF1 17862 92 - 1 CCAUCUCUCCUUCUGCCACCGACUGGCAAUUUGUGGCCAUAUAG--------CCAUAUAGCCGCGUUACGUUCCAGUGAUCGAAUUCGAUUUUACAGUUC ............(((......(((((.(((.((((((.((((..--------..)))).))))))....))))))))(((((....)))))...)))... ( -21.00) >DroEre_CAF1 17692 84 - 1 UCUUCUCUCUUUCUGCCAACAACGUGCAAUUUGUGGCCAUA----------------UAGCCGCACUACGUUCCAGUGAUCGAAUUCGAUUUUACAGUUC ............(((.....((((((.....((((((....----------------..)))))).)))))).....(((((....)))))...)))... ( -16.20) >DroYak_CAF1 17479 84 - 1 UCUUCUCUCUCUCUGCGAACAACGUGCAAUUUGUGGCCAUA----------------UAGCCGCACUACGUUCCAGUGAUCGAAUUCGAUUUUACAGUUC ................((((((((((.....((((((....----------------..)))))).))))))...(((((((....)))))..)).)))) ( -18.60) >consensus CCAUCUCUCCUUCUGCCACCAACUGGCAAUUUGUGGCCAUAUAG________CCAUAUAGCCGCGUUACGUUCCAGUGAUCGAAUUCGAUUUUACAGUUC .............(((((.....)))))...((((((.((((.((......)).)))).))))))..........(((((((....)))))..))..... (-14.74 = -15.90 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:39 2006