Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,614,829 – 4,614,933 |
Length | 104 |
Max. P | 0.588143 |
Location | 4,614,829 – 4,614,933 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -27.65 |
Consensus MFE | -17.46 |
Energy contribution | -18.65 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.22 |
Mean z-score | -1.79 |
Structure conservation index | 0.63 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4614829 104 + 27905053 AGGCAUCGCCGAUGCCUUACAAACAGCCAUCGCCAAACUAAUAGCACUGGCGUGCUUAC--GACCUGCAUGCAGAAUCGAUCUAAGCGAUCGCUGAUUAUAAGCAA (((((((...)))))))......((((.(((((.........(((((....)))))..(--((.(((....)))..)))......))))).))))........... ( -31.80) >DroSec_CAF1 13759 106 + 1 AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAAUUAAUAGCACUGGCAUGCUGACAUGACCUGAAUGCAGAAUCAAUCUAAGCGAUUGCUGAUCACAAGCAA (((((((...)))))))......((((.((.((..........(((..((((((....)))).))....)))(((.....)))..)).)).))))........... ( -26.10) >DroSim_CAF1 14972 106 + 1 AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAAUUAAUAGCAUUGGCAUGCUGACAUGACCUGAAUGCAGAAUCGAUCUAAGCGAUUGAUGAUCACAAGCAA .(((((.((((((((..........((....))..........)))))))))))))....(((.(((....))).(((((((.....)))))))..)))....... ( -28.75) >DroYak_CAF1 14516 101 + 1 AGGCAUCGCCGGUGUCUUACAAACAGCCAUGGCCACACUAAUACCAUCGGGAUGCAUA--CGACCUGAAUUCUGGAUCGAUCUAAGCAAUU---AACCGUAUGCAA ..(((((.((((((...........((....))...........)))))))))))...--(((((........)).)))......(((...---.......))).. ( -23.95) >consensus AGGCAUCGCCGAUGCCUUACAAACAGCCAUGGCCAAACUAAUAGCACUGGCAUGCUGAC_UGACCUGAAUGCAGAAUCGAUCUAAGCGAUUGCUGAUCACAAGCAA .(((((.((((((((..........((....))..........)))))))))))))........(((....)))...(((((.....))))).............. (-17.46 = -18.65 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:37 2006