Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,613,300 – 4,613,391 |
Length | 91 |
Max. P | 0.943208 |
Location | 4,613,300 – 4,613,391 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 79.85 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -14.01 |
Energy contribution | -14.82 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.20 |
Mean z-score | -2.56 |
Structure conservation index | 0.57 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943208 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4613300 91 - 27905053 UUGAACUGGGUUCGGCUGAAAUUGCUUGAUUUUUGAGCUGAGCUGAGUCCAGUUGAGUUGUGUUGGCUUUGGGCUUAGAGGCUAAUUAGCU ...((((((..((((((.(....(((..(...)..)))).))))))..)))))).(((((.(((((((((.......)))))))))))))) ( -33.70) >DroSec_CAF1 12365 86 - 1 UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUUGU-----CUUGAGUUUAUUUGGCUUUGGGCUUAGAGGCUAAUUAGCU .((((((.(((((((((..((..........))..)))))))....-----.)).))))))...((((...((((....))))....)))) ( -21.70) >DroSim_CAF1 13507 86 - 1 UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUAGA-----GUUGAGUUGAUUUGGCUUUGGGCUUAGAGGCUAAUUAGCU ...((((..((((((((..((..........))..))))))))..)-----))).((((((((.((((((.......)))))))))))))) ( -24.80) >DroEre_CAF1 13405 71 - 1 UUGAACUGGGUUCGGCUUGGAUUGCUUGAUUUUUGAGU--------------------UAAGUUGGCGUUGGACUGGGCGGCUAAUUAGCU .....((.((((((((...(...((((((((....)))--------------------)))))...))))))))).)).((((....)))) ( -17.80) >consensus UUGAACUGGGUUCGGCUUGAAUUGCUUGAUUUUUGAGCUGAGUUGA_____GUUGAGUUGAGUUGGCUUUGGGCUUAGAGGCUAAUUAGCU .....((((((((((((((((..........))))))))...............(((((.....))))).)))))))).((((....)))) (-14.01 = -14.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:36 2006