Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,612,580 – 4,612,675 |
Length | 95 |
Max. P | 0.500000 |
Location | 4,612,580 – 4,612,675 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -22.94 |
Consensus MFE | -17.62 |
Energy contribution | -17.99 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.33 |
Mean z-score | -1.49 |
Structure conservation index | 0.77 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4612580 95 + 27905053 UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG ((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..)))).....))))........ ( -25.02) >DroVir_CAF1 19710 89 + 1 UUUCGAGCGUUGAUUUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUUAAAAGAACGGGAAUAGA------AA .(((..((((......))))..(((((.(((....((((.(((((((((........)))))))))..))))....)))))))).))------). ( -18.60) >DroGri_CAF1 18609 87 + 1 UUUCAAGCGUUGAUCUAUGCACAUUCUUCGUAUUGUUGAUUAGCUCAAUAUUCUUGAGUUGGGUUAUCUGCAAGAAAUAAAAGUGGA-------- ((((..((((......))))............((((.(((.((((((((........))))))))))).))))))))..........-------- ( -17.10) >DroSim_CAF1 12797 95 + 1 UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGGAAAAUUAG ((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..))))......))))....... ( -25.02) >DroYak_CAF1 12298 95 + 1 UCUCGAGCGCUGAUUUAUGUGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG ((((..((((........))))((((..((((.......(((((((((.....)))))))))......))))..)))).....))))........ ( -25.02) >DroAna_CAF1 13221 95 + 1 UCUCGAGCGCUGAUUUAUGCGCAUUUUUCUUAUUGUUGAUCAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUAAACGAGGAAAAAUUAG (((((.((((........))))...(((((..(...((((((((((((.....))))))).)))))...)..)))))....)))))......... ( -26.90) >consensus UCUCGAGCGCUGAUUUAUGCGCAUUUUUCGUAUUGUUGAUUAGCUCAAUGUUCUUGAGUUGGGUUAUCUGCGGGAAAUGGAUGGGGAAAAAUUAG ((((..((((........))))((((((((((.......(((((((((.....)))))))))......))))))))))....))))......... (-17.62 = -17.99 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:35 2006