Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 808,853 – 808,946 |
Length | 93 |
Max. P | 0.810586 |
Location | 808,853 – 808,946 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 66.37 |
Mean single sequence MFE | -32.95 |
Consensus MFE | -14.93 |
Energy contribution | -14.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.36 |
Mean z-score | -1.95 |
Structure conservation index | 0.45 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.810586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 808853 93 + 27905053 GU------------------------UGAUGGUGGUGAAAUUUCUAUGGAAGUA---GUAGGUCCUAGUGUAGUGGUGCCCACUACUUCUGGAGCCAUCGCUCUCUUCGCUAGGAUAGUA ..------------------------......(((((((........(((((((---((.((..(((......)))..)).)))))))))(((((....))))).)))))))........ ( -29.40) >DroSec_CAF1 5674 117 + 1 GUUGAUGUCGAUGUAUCAUCUUGUAUUGAUGUUGAUGGCAUAUAUAUGGACGUU---GUCGUUCCUGGUGUAGUGGUGCCCACUACUUCUGGACCCAUCGCUCGCUCAGCCAGGAUUGUA ...((((((.((((((((((.............))))....)))))).))))))---..((.((((((((((((((...)))))))...((....))...........))))))).)).. ( -33.02) >DroEre_CAF1 5158 99 + 1 GCUGUUGAGGU---------------UGAUGGUGAUAAAGUUCCUAUGGACGUAGAUA------GUGGUGUAGUGGUGCCCACUAAUUCUGGAGCCAUCGCUCGUUCAGCCGCGAUAGUA (((((((.(((---------------(((.((((((...((((((((....)))..((------((((.(((....))))))))).....))))).))))))...)))))).))))))). ( -36.90) >DroYak_CAF1 830 105 + 1 GUUGAUGUGGA---------------UGAUGGUGGUAAAAUUUCUAUGGAUGUAUGUAUAGUUUCUGUUGUGGUGGUGCCUACUACUUCUGGAGCCAUUGCCGCUUUAUCCAGGUUAGUA .(((((.((((---------------(((.((((((((....((....))..........(((((....(((((((...)))))))....)))))..))))))))))))))).))))).. ( -32.50) >consensus GUUGAUGUGGA_______________UGAUGGUGAUAAAAUUUCUAUGGACGUA___AUAGUUCCUGGUGUAGUGGUGCCCACUACUUCUGGAGCCAUCGCUCGCUCAGCCAGGAUAGUA ..........................(.((((..((...))..)))).).............((((((((((((((...))))))).....((((....)))).....)))))))..... (-14.93 = -14.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:20 2006