| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 180,176 – 180,282 |
| Length | 106 |
| Max. P | 0.626359 |
| Location | 180,176 – 180,282 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.86 |
| Mean single sequence MFE | -29.62 |
| Consensus MFE | -17.02 |
| Energy contribution | -17.50 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 180176 106 + 27905053 GGGUCGCCGCUUAAAUUGAGCGUGCGCAAUCGAUUUGGUGCCGCAUUUUAGUCACCGAAUUUGUAUUUAGUUUAAAACCUAAUACGAAGGUGUGCGACGCGUGAAG-------------- (.((((((((((.....))))).((((..(((((((((((.(........).))))))))).(((((..((.....))..)))))))..))))))))).)......-------------- ( -33.30) >DroVir_CAF1 19021 120 + 1 CGGUCGCCGCUCAAAUUGAGCGUAUGAAAUUGAUUAGCCAACGCAUUUUAGUUACAAUAUUUGUAUUUAGUUUAUAAACUAAUUCGAAAUUCGGUGGCCCAUUAACAAAGUGGCGUGCGU ..((((((((((.....))))........(((((..((((.((.(((((...((((.....)))).((((((....))))))...))))).)).))))..)))))......)))).)).. ( -29.00) >DroPse_CAF1 18192 106 + 1 GGGUCGCCGCUCAAAUUGAGCGUAUUAAAUCGAUUAGGCAACGCAUUUUAGUCACCAUAUUUGUAUUUAGUUUAUAAACUAAUUCGAAACUGGACGGCCCAUGAAA-------------- ((((((.(((((.....))))).........(((((((........))))))).(((..((((...((((((....))))))..))))..))).))))))......-------------- ( -29.40) >DroEre_CAF1 16730 103 + 1 GGGUCGCCGCUUAAAUUGAGCGUGCGCAAUCGAUUAG---UCGCAUUUUCGUCACCGAAUUUGUAUUUAGUUUAAAACCUAAUUCAAAAGUAGGCGACCCGUAAGG-------------- ((((((((((((...((((((....))....((((((---..(((..((((....))))..)))..))))))...........)))))))).))))))))......-------------- ( -32.40) >DroYak_CAF1 17455 106 + 1 GGGUCGCCGCCUAAAUUGAGCGUGCGCAAUCGAUUAGCAGCCGCAUUUUCGUCACGAAAUUUGUAUUUAGUUUAAAACCUAAUUCGAAAGUAUGGGGUCCGUGAAG-------------- ..(.(((((((......).))).))))...(((..(((....)).)..)))((((((((((.......)))))...((((....(....)....)))).)))))..-------------- ( -22.40) >DroPer_CAF1 17895 106 + 1 GGGUCGCCGCUCAAAUUGAGCGUAUUAAAUCGAUUAGGUAACGCAUUUUAGUCACCAUAUUUGUAUUUAGUUUAUAAACUAAUUCGAAACUGGACGGCCCAUGAAA-------------- ((((((((((((.....))))........((((...(((.((........)).)))..........((((((....)))))).))))....)).))))))......-------------- ( -31.20) >consensus GGGUCGCCGCUCAAAUUGAGCGUACGAAAUCGAUUAGGCAACGCAUUUUAGUCACCAAAUUUGUAUUUAGUUUAAAAACUAAUUCGAAAGUGGGCGGCCCAUGAAG______________ ((((((((((((.....))))......................................((((...((((........))))..))))....)))))))).................... (-17.02 = -17.50 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:18 2006