| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,597,803 – 4,597,914 |
| Length | 111 |
| Max. P | 0.655891 |
| Location | 4,597,803 – 4,597,914 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 79.33 |
| Mean single sequence MFE | -39.39 |
| Consensus MFE | -26.36 |
| Energy contribution | -27.28 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.655891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4597803 111 - 27905053 C--UGUUU----AGCCCACUGUUCCAACCACAUCUUCCACUCUGACAUGUAGCUAUGGUCUGGUGGCCUGCUGCCAGGCGGGAAGCUAUCAGUGUGGUCGGAGGUUCCCGCCUCCAC .--.....----........................((((.((((....(((((.(.((((((..(....)..)))))).)..))))))))).))))..((((((....)))))).. ( -40.80) >DroPse_CAF1 796 115 - 1 C--UGUUUGAGCAGCCAUCGAUUCCGAGCACUUCUGCUACCUUGACCUGCAGCUAUGGACAGGUGGCCUGCUGCCAGGCGGGAAGCUAUCAGUGUGGUCGCCGUUUCCCGCCGCCAC .--......((((((((((...(((((((.....(((...........)))))).))))..))))).)))))....((((((((((.....(((....))).))))))))))..... ( -42.60) >DroEre_CAF1 814 113 - 1 CCUUUUUC----AGGCCACUGUUCCAACCACAUCUUCCACGCUGACCUGUAGCUAUGGUCUGGUGGCCUGUUGCCAGGCGGGAAGCUAUCAGUGUGGGCGGAGGUUUCCACCACCAC .......(----((....)))..............((((((((((....(((((.(.((((((..(....)..)))))).)..))))))))))))))).((.(((....))).)).. ( -40.50) >DroWil_CAF1 819 113 - 1 CAUUCUUU----AGCCCACACCGCCAACAACAGCCUCCACAUUGACCUGUAGCUAUGGACUAGUGGCUUGUUGUCAGGCAGGAAGCUAUCAAUGCGGUCGUCGGUUCCCACCACCGC ........----((((.(((((((.......(((.(((...(((((....((((((......))))))....)))))...))).)))......))))).)).))))........... ( -31.82) >DroYak_CAF1 804 111 - 1 C--UGUUU----AGCCCACUGCUCCUACCACAUCCUCCACGCUGACCUGUAGCUAUGGUCUGGUGGCCUGCUGCCAGGCGGGAAGCUAUCAGUGUGGGCGCAGGUUUCCUCCUCCAC (--(((..----(((.....)))............((((((((((....(((((.(.((((((..(....)..)))))).)..))))))))))))))).)))).............. ( -39.00) >DroAna_CAF1 794 110 - 1 ---UUUUC----AGCCAACCAUUCCCUCCUCAGCUUCAACGCUGACCUGCAGCUAUGGCCUGGUGGCCUGCUGCCAGGCGGGAAGCUAUCAGUGCGGCCGCCGCUUCCCACCCCCGC ---.....----.(((.............(((((......)))))...(((((...((((....)))).)))))..)))(((((((.....(.((....))))))))))........ ( -41.60) >consensus C__UGUUU____AGCCCACUGUUCCAACCACAUCUUCCACGCUGACCUGUAGCUAUGGUCUGGUGGCCUGCUGCCAGGCGGGAAGCUAUCAGUGUGGUCGCAGGUUCCCACCACCAC ..............................(.((..(((((((((....(((((.(.((((((..(....)..)))))).)..))))))))))))))..)).).............. (-26.36 = -27.28 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006