Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,586,035 – 4,586,129 |
Length | 94 |
Max. P | 0.664274 |
Location | 4,586,035 – 4,586,129 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.90 |
Mean single sequence MFE | -21.50 |
Consensus MFE | -10.58 |
Energy contribution | -12.14 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.19 |
Mean z-score | -2.28 |
Structure conservation index | 0.49 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4586035 94 + 27905053 GAGGUUGAAAAGUGCGGG-GCAAAUGAAAAAUGUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUGUAUGUAAAUAUAUGUAC-AUAUAGUGU ..........(((((((.-((((.(((......)))....))))...)))))))...(((...((((((((((((....)))))))-))))).))) ( -22.30) >DroSec_CAF1 9941 81 + 1 GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAGAAUAUAU--------------GUGC-AUAUAGUGU ((((((.....((((....))))......))))))((((..((((.((((((....)))))......)--------------.)))-)..)))).. ( -25.90) >DroSim_CAF1 10184 85 + 1 GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUGUAU----------GUAC-AUAUAGUGU ((((((.....((((....))))......)))))).....((((((.........))))))..(((((((..----------..))-))))).... ( -23.00) >DroEre_CAF1 9846 82 + 1 GAGCUUGAAAAGUGCGGGAGCAUAUGAAAUUCCUCACUAAUUGCAGGCUGCAUUAUUGCAACAUAUAUG--------------UAUUGCAUAGUAU .((((((...((((.((((.(....)...)))).)))).....))))))(((....)))......((((--------------.....)))).... ( -19.90) >DroYak_CAF1 10117 81 + 1 GAGGUUGAAAAGUGCGGGUGGCUGUGAAAUCCCUCACUAAUUGCACGCUGCAUUAUUGCGAAAUAUAUG--------------UAC-GUAUAGUAU ...........(((((((((((.((((......)))).....)).))))(((....)))........))--------------)))-......... ( -16.40) >consensus GAGGUUGAAAAGUGCGGGAGCAUAUGAAAAACCUCACUAAUUGCAGGCUGCAUUAUUGCAAAAUAUAUG_____________GUAC_AUAUAGUGU ((((((.....((((....))))......)))))).....((((((.........))))))................................... (-10.58 = -12.14 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:32 2006