Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,574,738 – 4,574,828 |
Length | 90 |
Max. P | 0.978361 |
Location | 4,574,738 – 4,574,828 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -16.10 |
Consensus MFE | -14.38 |
Energy contribution | -14.12 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.13 |
Mean z-score | -2.57 |
Structure conservation index | 0.89 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4574738 90 - 27905053 ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU .....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30) >DroSec_CAF1 31532 90 - 1 ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU .....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30) >DroSim_CAF1 32096 90 - 1 ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU .....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... ( -16.30) >DroYak_CAF1 32056 87 - 1 ACCAUGUUUUAUUUACAUUAAAUUAAACCGCUUUUUGUUUAUGAAGCA---UGGUCUAUAAAUAACCGGCACACAUUUAUGAAAUUCCAU ((((((((((((..(((..((..........))..)))..))))))))---)))).(((((((...........)))))))......... ( -15.50) >consensus ACCACGUUUUAUUUACAUUAAAUUGAAACGUCCUUUGUUUAUGAACCAAUGUGGUCUAUAAAUAACCGACACACAUUUAUGAAAUUCCAU .....((((((.((......)).))))))(((..(((((((((.(((.....))).)))))))))..))).................... (-14.38 = -14.12 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:27 2006