Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,573,961 – 4,574,056 |
Length | 95 |
Max. P | 0.999984 |
Location | 4,573,961 – 4,574,056 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -37.22 |
Consensus MFE | -35.20 |
Energy contribution | -36.20 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.06 |
Mean z-score | -3.97 |
Structure conservation index | 0.95 |
SVM decision value | 5.35 |
SVM RNA-class probability | 0.999984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4573961 95 + 27905053 GUUAGUGUAGGUGUAUG--UGUUGUCUGUGUGUGUUUGUGGUUGCUGGCGCGGGCGAAUGGCGGGUAAUCCGCAUACACUCGCACUUAUUUUUUGCA ...((((..((((((((--(((..(.(((.(((((..((....))..))))).))).)..)).((....)))))))))))..))))........... ( -34.60) >DroSec_CAF1 30719 97 + 1 GUUAGUGUAGGUGUAUGUGUGUUGUCUGUGUGUGUUUGUGGUUGUUGGCGCGGGCGAAUGGCGGGCAAUCCGCAUACACUCGCACUUAUUUUUUGCA ...((((..((((((((((..((((((((...((((((((.(....).))))))))....))))))))..))))))))))..))))........... ( -41.60) >DroSim_CAF1 31282 97 + 1 GUUAGUGUAGGUGUAUGUGUGUUGUCUGUGUGUGUUUGUGGUUGUUGGCGCGGGCGAAUGGCGGGCAAUCCGCAUACACUCGCACUUAUUUUUUGCA ...((((..((((((((((..((((((((...((((((((.(....).))))))))....))))))))..))))))))))..))))........... ( -41.60) >DroEre_CAF1 31624 95 + 1 GUUAGUGUAGGUGUAUGUGUAUAGUCUG--UGUGUUUGUGGUUGUUGGCGCGGGCGAAUGGCGGGCAAUCCGCAUACACUCGCACUUAUUUUUCGCA ...((((..((((((((((.((.(((((--(.((((((((.(....).))))))))....)))))).)).))))))))))..))))........... ( -36.40) >DroYak_CAF1 31222 95 + 1 GUUAGUGAAGGUGUAUGUGUAUUGUCUG--UGUGUUAGUGGUUGUUGGCGCGGGCGAAUGGCGGGCAAUCCCCAUACACUCGCACUUAUUUUUUGCA ...((((..((((((((.(.((((((((--(.(((..(((.(....).)))..)))....))))))))).).))))))))..))))........... ( -31.90) >consensus GUUAGUGUAGGUGUAUGUGUGUUGUCUGUGUGUGUUUGUGGUUGUUGGCGCGGGCGAAUGGCGGGCAAUCCGCAUACACUCGCACUUAUUUUUUGCA ...((((..((((((((((.(((((((((...((((((((.(....).))))))))....))))))))).))))))))))..))))........... (-35.20 = -36.20 + 1.00)
Location | 4,573,961 – 4,574,056 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.42 |
Mean single sequence MFE | -17.76 |
Consensus MFE | -16.24 |
Energy contribution | -16.44 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.91 |
SVM decision value | 2.78 |
SVM RNA-class probability | 0.997005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4573961 95 - 27905053 UGCAAAAAAUAAGUGCGAGUGUAUGCGGAUUACCCGCCAUUCGCCCGCGCCAGCAACCACAAACACACACAGACAACA--CAUACACCUACACUAAC ............(((((.(((.((((((.....))).))).))).)))))............................--................. ( -17.60) >DroSec_CAF1 30719 97 - 1 UGCAAAAAAUAAGUGCGAGUGUAUGCGGAUUGCCCGCCAUUCGCCCGCGCCAACAACCACAAACACACACAGACAACACACAUACACCUACACUAAC ............(((((.(((.((((((.....))).))).))).)))))............................................... ( -17.60) >DroSim_CAF1 31282 97 - 1 UGCAAAAAAUAAGUGCGAGUGUAUGCGGAUUGCCCGCCAUUCGCCCGCGCCAACAACCACAAACACACACAGACAACACACAUACACCUACACUAAC ............(((((.(((.((((((.....))).))).))).)))))............................................... ( -17.60) >DroEre_CAF1 31624 95 - 1 UGCGAAAAAUAAGUGCGAGUGUAUGCGGAUUGCCCGCCAUUCGCCCGCGCCAACAACCACAAACACA--CAGACUAUACACAUACACCUACACUAAC ............(((((.(((.((((((.....))).))).))).))))).................--............................ ( -17.60) >DroYak_CAF1 31222 95 - 1 UGCAAAAAAUAAGUGCGAGUGUAUGGGGAUUGCCCGCCAUUCGCCCGCGCCAACAACCACUAACACA--CAGACAAUACACAUACACCUUCACUAAC ............(((((.(((.((((((.....)).)))).))).))))).................--............................ ( -18.40) >consensus UGCAAAAAAUAAGUGCGAGUGUAUGCGGAUUGCCCGCCAUUCGCCCGCGCCAACAACCACAAACACACACAGACAACACACAUACACCUACACUAAC ............(((((.(((.((((((.....))).))).))).)))))............................................... (-16.24 = -16.44 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:26 2006