Locus 1586

Sequence ID 3R_DroMel_CAF1
Location 4,542,846 – 4,542,966
Length 120
Max. P 0.860165
window2618

overview

Window 8

Location 4,542,846 – 4,542,966
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 89.67
Mean single sequence MFE -38.85
Consensus MFE -33.63
Energy contribution -33.55
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -1.91
Structure conservation index 0.87
SVM decision value 0.82
SVM RNA-class probability 0.860165
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4542846 120 + 27905053
AUGAACGCCAGCCUCAUCUAUGAGAUACUUAUGUAUCUGAACUCGUUCUACUUUGGCAUGUACGCCGCCUUCGAAGUGGGCGUGGGCGUUCUUAAGGCGAUUAAUCUAAACUACGGCGAG
.....((((.((((........((((((....))))))((((....(((((...(((......)))((((.......))))))))).))))...))))((....))........)))).. ( -35.40)
>DroGri_CAF1 1 120 + 1
AUGAACGCCAGCCUGAUAUAUGAGAUACUCAUGUAUUUGAACUCAUUCUAUUUUGGCAUGUAUGCCGCCUUCGAGGUGGGCGUGGGCGUGCUAAAGGCAAUAAAUCUGAAUUAUGGCGAA
.....(((((((((((((((((((...))))))))))...............(((((((((((((((((.....))).)))))..)))))))))))))(((........))).))))).. ( -41.20)
>DroWil_CAF1 1 120 + 1
AUGAACGCCAGCCUCAUCUAUGAGAUACUUAUGUAUCUAAACUCAUUCUAUUUUGGCAUGUACGCCGCCUUCGAGGUGGGCGUGGGCGUUCUAAAGGCAAUCAAUUUGAAUUACGGUGAA
..(((((((.(((.(((((...((((((....))))))................(((......))).......))))))))...)))))))..((..(((.....)))..))........ ( -35.60)
>DroMoj_CAF1 1 120 + 1
AUGAAUGCCAGCCUCAUAUAUGAGAUACUCAUGUAUUUGAACUCGUUCUAUUUUGGCAUGUACGCCGCCUUCGAGGUGGGCGUGGGCGUGCUAAAGGCAAUCAAUCUGAAUUAUGGUGAA
.(((.((((...(..(((((((((...)))))))))..)............((((((((((((((((((.....))).)))))..)))))))))))))).)))................. ( -39.70)
>DroAna_CAF1 1 120 + 1
AUGAACGCCAGCCUCAUCUAUGAGAUACUGAUGUAUCUUAACUCGUUCUACUUUGGCCUGUACGCCACCUUUGAAGUGGGCGUGGGCGUGCUGAAGGCAAUCCAUCUGAACUACGGCGAG
.....((((...........((((((((....))))))))....((((.......(((((((((((.(((.......)))....)))))))...)))).........))))...)))).. ( -39.29)
>DroPer_CAF1 1 120 + 1
AUGAACGCCAGCCUCAUCUAUGAGAUACUCAUGUAUCUGAAUUCAUUCUAUUUUGGCAUGUACGCCGCCUUUGAGGUGGGCGUGGGCGUGCUGAAGGCAAUCAACCUGAACUACGGCGAG
.....((((.(((.......(.((((((....)))))).)...........((..((((((((((((((.....))).)))))..))))))..)))))..((.....)).....)))).. ( -41.90)
>consensus
AUGAACGCCAGCCUCAUCUAUGAGAUACUCAUGUAUCUGAACUCAUUCUAUUUUGGCAUGUACGCCGCCUUCGAGGUGGGCGUGGGCGUGCUAAAGGCAAUCAAUCUGAACUACGGCGAA
.....((((.(((.........((((((....)))))).............((((((((((((((((((.....))).)))))..)))))))))))))..((.....)).....)))).. (-33.63 = -33.55 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:13 2006