Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,542,075 – 4,542,175 |
Length | 100 |
Max. P | 0.926719 |
Location | 4,542,075 – 4,542,175 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 92.03 |
Mean single sequence MFE | -23.35 |
Consensus MFE | -19.17 |
Energy contribution | -19.93 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.82 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4542075 100 + 27905053 AGCGGGCAACAACAACGCACAACAACGCGUAUAAAUAAACGUGAACGCAUGUACUUAAUAUUAGCAUAGAGUUGUCGCCUGCGUGCAUUUCAUAUACAUA .((((((.(((((.((((........))))........(((((....)))))..................))))).)))))).................. ( -26.80) >DroSec_CAF1 39289 90 + 1 AUCGGGCAACAAC----------AACGCGUAUAAAUAAACGUGAACGCAUGUACUUAAUAUUAGCAUAGAGUUGUCGCCUGCGUGCAUUACAUAUACAUA ..(((((.(((((----------..(((((........)))))...((((((.....))))..)).....))))).)))))................... ( -19.80) >DroEre_CAF1 41486 96 + 1 AGCGGGCAACAACAACGCAC----ACGCGUAUAAAUAAACGUGAACGCAUGUACUUAAUAUUAGCAUAGAGUUGUCGCCUGCGUGCAUUGCAUAUACAUA .((((((.(((((.((((..----..))))........(((((....)))))..................))))).))))))((((...))))....... ( -28.50) >DroYak_CAF1 40216 96 + 1 AACGAGCAACAACAACGCAC----ACGCGUAUAAAUAAACGUGAACGCAUGUACUUAAUAUUAGCAUAGAGUUGUCGCCUGCGUGCAUUGCAUAUACAUA .....((.(((((.((((..----..))))........(((((....)))))..................))))).)).((((.....))))........ ( -18.30) >consensus AGCGGGCAACAACAACGCAC____ACGCGUAUAAAUAAACGUGAACGCAUGUACUUAAUAUUAGCAUAGAGUUGUCGCCUGCGUGCAUUGCAUAUACAUA .((((((.(((((............(((((........)))))...((((((.....))))..)).....))))).)))))).................. (-19.17 = -19.93 + 0.75)
Location | 4,542,075 – 4,542,175 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 92.03 |
Mean single sequence MFE | -28.38 |
Consensus MFE | -22.50 |
Energy contribution | -22.44 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.73 |
Structure conservation index | 0.79 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4542075 100 - 27905053 UAUGUAUAUGAAAUGCACGCAGGCGACAACUCUAUGCUAAUAUUAAGUACAUGCGUUCACGUUUAUUUAUACGCGUUGUUGUGCGUUGUUGUUGCCCGCU ..(((((.....))))).((.(((((((((...(((((((((........((((((..............))))))))))).)))).))))))))).)). ( -29.04) >DroSec_CAF1 39289 90 - 1 UAUGUAUAUGUAAUGCACGCAGGCGACAACUCUAUGCUAAUAUUAAGUACAUGCGUUCACGUUUAUUUAUACGCGUU----------GUUGUUGCCCGAU ..(((((.....)))))((..(((((((((...((((......((((((...(((....))).))))))...)))).----------))))))))))).. ( -23.50) >DroEre_CAF1 41486 96 - 1 UAUGUAUAUGCAAUGCACGCAGGCGACAACUCUAUGCUAAUAUUAAGUACAUGCGUUCACGUUUAUUUAUACGCGU----GUGCGUUGUUGUUGCCCGCU ..(((((.....))))).((.(((((((((..(((....)))....((((((((((..............))))))----))))...))))))))).)). ( -32.64) >DroYak_CAF1 40216 96 - 1 UAUGUAUAUGCAAUGCACGCAGGCGACAACUCUAUGCUAAUAUUAAGUACAUGCGUUCACGUUUAUUUAUACGCGU----GUGCGUUGUUGUUGCUCGUU ..(((((.....))))).((..((((((((..(((....)))....((((((((((..............))))))----))))...))))))))..)). ( -28.34) >consensus UAUGUAUAUGCAAUGCACGCAGGCGACAACUCUAUGCUAAUAUUAAGUACAUGCGUUCACGUUUAUUUAUACGCGU____GUGCGUUGUUGUUGCCCGCU ..(((((.....))))).((.(((((((((....((((.......)))).((((((..............))))))...........))))))))).)). (-22.50 = -22.44 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:12 2006