Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,539,546 – 4,539,656 |
Length | 110 |
Max. P | 0.829915 |
Location | 4,539,546 – 4,539,656 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.07 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -14.35 |
Energy contribution | -16.48 |
Covariance contribution | 2.13 |
Combinations/Pair | 1.07 |
Mean z-score | -2.02 |
Structure conservation index | 0.68 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829915 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4539546 110 - 27905053 AUUUGCUGGUCAAGUGCCUCAACAAAAGGCU---AUGUUAUGAGCUUUUAACUCUACCUGCAUUUUUAAUAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACAAUCCUUUAUA------- ...(((.(((..(((.........(((((((---........))))))).)))..))).)))......((((((.....(((((..........))))).......)))))).------- ( -16.50) >DroSec_CAF1 36771 111 - 1 AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUCAUAACACAUGAGCUUUUAAC--UACCUGCACUUUUGAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACCAUACUUUAAA------- (((((((..((((((((.......((((((((((.....))))))))))...--.....)))))..)))...)))))))(((((..........)))))..............------- ( -26.76) >DroSim_CAF1 30688 111 - 1 AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUCAUAACACAUGAGCAUUUAAC--UACCUGCACUUUUGAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACCAUACUUUAAA------- (((((((..((((((((...........((((((.....)))))).......--.....)))))..)))...)))))))(((((..........)))))..............------- ( -23.60) >DroYak_CAF1 37627 113 - 1 AUUUGCUGGUCAAGUGGCUCAACAAAAGGCUU--GUGUUAUUAGCGUUUAAC--UACCUGCACUU-UAAUAAAGCA-AUAUGGUAUCAUAAAUGAUCAUUAGAAU-CUUUAACUACGACU .((((.((((((....(((.....((((((..--((((((........))))--.))..)).)))-).....))).-.((((....))))..)))))).))))..-.............. ( -18.00) >consensus AUUUGCUGGUCAAGUGCCUCAACAAAAGGCUC__AACACAUGAGCUUUUAAC__UACCUGCACUUUUAAAAAAGCAGAUAUGAUUCCAUAAAUUAUCAUUACAAUACUUUAAA_______ (((((((....((((((.......((((((((((.....))))))))))..........)))))).......)))))))(((((..........)))))..................... (-14.35 = -16.48 + 2.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006