Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,536,916 – 4,537,017 |
Length | 101 |
Max. P | 0.996454 |
Location | 4,536,916 – 4,537,017 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 72.67 |
Mean single sequence MFE | -12.84 |
Consensus MFE | -3.56 |
Energy contribution | -4.20 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.68 |
Structure conservation index | 0.28 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.585050 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4536916 101 + 27905053 AUUCCACUCAUCAAGAUACGGACAUGC----------A--UAUGCAUAUACUUACACUCU---CGUAAAUAUUUGCAAUUAAAUAUGCCAAAAAUUCACCGAAAAUAUACAAAUAC ..(((..((.....))...)))...((----------(--((((((.(((.((((.....---.)))).))).))))......)))))............................ ( -11.80) >DroSim_CAF1 26824 109 + 1 AUUCCACUCAUCGAGAUACGCACAUGCUUACAUAC--A--UCUGCAUAUACUUACACUCU---CGUAAAUAUUUGCAAUUAAAUAUGCCAAAAAUUCACCGAAAAUAUACAAAUAC ..........(((......((....))...((((.--.--..((((.(((.((((.....---.)))).))).))))......))))............))).............. ( -11.10) >DroEre_CAF1 36476 108 + 1 AUUCCACUCAUCGGGAUACUCACAUACAUACAUAC--G--UAUGCAUAUAGUUACACUCU---CGUAAAUAUUUGCAAUUAAAUAUGCCAA-AAUUCACAGAAAAUAUACAAAUAC ............((.(((.........((((....--)--)))(((.(((.((((.....---.)))).))).))).......))).))..-........................ ( -12.30) >DroAna_CAF1 32121 93 + 1 AUUCCAUUCUGUG-----------UGUGUGUACGC--C--UCUGCAUCUACUUCCACUGU---CGUAAAUAUUUGCAAUUAAAUAUGCCAAAUAUUUACCAGA-A--UACA--UAC .....((((((.(-----------((.(((((...--.--..))))).))).........---.(((((((((((((........)).)))))))))))))))-)--)...--... ( -20.10) >DroPer_CAF1 36585 114 + 1 GUUCCACUCAUAUAUACAUACAUAUGGAUACGUAUCUAUCUACAUAUAUACUUACCCGCUCGUCGUAAAUAUUUGCAAUUAAAUAUGCCAAAAAUACACCCGCAA--UACAAACAC (((......((((((..(((.(((((....))))).)))....))))))........((..((.(((.......(((........)))......)))))..))..--....))).. ( -8.92) >consensus AUUCCACUCAUCGAGAUACGCACAUGCAUACAUAC__A__UAUGCAUAUACUUACACUCU___CGUAAAUAUUUGCAAUUAAAUAUGCCAAAAAUUCACCGAAAAUAUACAAAUAC ..........................................((((.(((.((((.........)))).))).))))....................................... ( -3.56 = -4.20 + 0.64)
Location | 4,536,916 – 4,537,017 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 72.67 |
Mean single sequence MFE | -26.22 |
Consensus MFE | -7.22 |
Energy contribution | -9.38 |
Covariance contribution | 2.16 |
Combinations/Pair | 1.17 |
Mean z-score | -2.56 |
Structure conservation index | 0.28 |
SVM decision value | 2.70 |
SVM RNA-class probability | 0.996454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4536916 101 - 27905053 GUAUUUGUAUAUUUUCGGUGAAUUUUUGGCAUAUUUAAUUGCAAAUAUUUACG---AGAGUGUAAGUAUAUGCAUA--U----------GCAUGUCCGUAUCUUGAUGAGUGGAAU .......((((((((((.(((((.((((.((........)))))).)))))))---))))))))....(((((...--.----------)))))(((...((.....))..))).. ( -22.50) >DroSim_CAF1 26824 109 - 1 GUAUUUGUAUAUUUUCGGUGAAUUUUUGGCAUAUUUAAUUGCAAAUAUUUACG---AGAGUGUAAGUAUAUGCAGA--U--GUAUGUAAGCAUGUGCGUAUCUCGAUGAGUGGAAU .(((((.((((((((((.(((((.((((.((........)))))).)))))))---))))))))((.(((((((.(--(--((......)))).)))))))))....))))).... ( -28.30) >DroEre_CAF1 36476 108 - 1 GUAUUUGUAUAUUUUCUGUGAAUU-UUGGCAUAUUUAAUUGCAAAUAUUUACG---AGAGUGUAACUAUAUGCAUA--C--GUAUGUAUGUAUGUGAGUAUCCCGAUGAGUGGAAU .......(((((((((.((((((.-...(((........)))....)))))))---))))))))((((((((((((--(--....)))))))))).))).((((.....).))).. ( -29.30) >DroAna_CAF1 32121 93 - 1 GUA--UGUA--U-UCUGGUAAAUAUUUGGCAUAUUUAAUUGCAAAUAUUUACG---ACAGUGGAAGUAGAUGCAGA--G--GCGUACACACA-----------CACAGAAUGGAAU ...--(.((--(-(((((((((((((((.((........))))))))))))).---...(((...((..((((...--.--))))..)).))-----------).))))))).).. ( -26.50) >DroPer_CAF1 36585 114 - 1 GUGUUUGUA--UUGCGGGUGUAUUUUUGGCAUAUUUAAUUGCAAAUAUUUACGACGAGCGGGUAAGUAUAUAUGUAGAUAGAUACGUAUCCAUAUGUAUGUAUAUAUGAGUGGAAC ((((((((.--(((((.(((((((....(((........)))...((((..(.....)..))))))))))).)))))))))))))...(((((.(((((....))))).))))).. ( -24.50) >consensus GUAUUUGUAUAUUUUCGGUGAAUUUUUGGCAUAUUUAAUUGCAAAUAUUUACG___AGAGUGUAAGUAUAUGCAUA__U__GUAUGUAUGCAUGUGCGUAUCUCGAUGAGUGGAAU ((((...((((((((..((((((.((((.((........)))))).))))))....)))))))).....))))........................................... ( -7.22 = -9.38 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:09 2006