Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,531,704 – 4,531,805 |
Length | 101 |
Max. P | 0.982214 |
Location | 4,531,704 – 4,531,805 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.79 |
Mean single sequence MFE | -25.68 |
Consensus MFE | -19.64 |
Energy contribution | -19.88 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -2.88 |
Structure conservation index | 0.76 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4531704 101 - 27905053 CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUAGGUAUUACAUAUAGAAAAUUUA (((.((((((....(((((((((((.......)))))))))))...))))))..............(((((......)))))........)))........ ( -26.10) >DroSec_CAF1 31650 100 - 1 CUACGU-CGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGCCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGCAUUUCAUUUAGAAAAUAUA (((..(-(((....(..((((((((.......))))))))..)...))))...........(((((.((.........))))))).....)))........ ( -20.60) >DroSim_CAF1 22739 101 - 1 CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGCAUUUCAUUUAGAAAAUAUA (((.((((((....(((((((((((.......)))))))))))...)))))).........(((((.((.........))))))).....)))........ ( -27.10) >DroEre_CAF1 33477 101 - 1 CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGGGAAUCAACCAAAUGCUGCACCUAAAAAAAUGGGUAUUUCAUUUAGAAAAUGAA .....((((((((.(.(((.....))).))))))))).((((.(((((.......))))).)))).(((((......)))))..((((((.....)))))) ( -25.70) >DroYak_CAF1 32412 101 - 1 CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAAUCUUUGGGAAUCAACCAAAUGCUGCACCUAGAAAAAUGGGUUCUGCAUUUCGAAAAUGAA ....((((.(....(((((((((((.......)))))))))))...).))))...(.((((((.(.(((((......))))).).)))))).)........ ( -28.90) >consensus CUACGUUCGCUUUUGAUUGUUUUGCAAACAAAGCGAAACAGUCUUUGCGAAUCAACCAAAUAAUGCACCUGGGAAAAUGGGUAUUUCAUUUAGAAAAUAUA ....((((((....(((((((((((.......)))))))))))...))))))...............((((......)))).................... (-19.64 = -19.88 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:07 2006