Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,525,061 – 4,525,152 |
Length | 91 |
Max. P | 0.573284 |
Location | 4,525,061 – 4,525,152 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -17.53 |
Energy contribution | -18.62 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.15 |
Mean z-score | -1.30 |
Structure conservation index | 0.63 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573284 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4525061 91 - 27905053 CCUCCGGAUCAGCGGCGCUGAUCCUGCGUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGAAG--UACG----GCCAACUUUUAAAU .....((((((((...)))))))).(((((((((.---((((........)))).))))))))).((((((--....)--))))----)............. ( -31.70) >DroVir_CAF1 32004 81 - 1 ---CAGGAUCAGAGUCGCUGAUCCU---UGAUCCUGCUGCAUGCUGCGUAAUGUUGGAUUAUGCA---------GUCG------CCUAGCCAAAAUUUAAAU ---.((((((((.....))))))))---.......((((..(((((((((((.....))))))))---------).))------..))))............ ( -26.00) >DroSec_CAF1 24889 97 - 1 CCUCCGGAUCAGCGGCGCUGAUCCUGCGUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGCGAAGAGG--UACGGCUGGCCAACUUUUAAAU ((((.((((((((...)))))))).(((((((((.---((((........)))).)))))))))..........))))--...((....))........... ( -32.80) >DroEre_CAF1 25507 97 - 1 CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU---GGGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGCCGUGUACGGCUGGCCAACUUUUAAAU .....(((((....((((.......)))))))))(---((((((.(((((((.....)))))))...))))--(((((....)))))..))).......... ( -30.10) >DroYak_CAF1 25259 95 - 1 CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU---GGGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC--AGCCG--UACGGCGGGCCAACUUUUAAAU ((.(((((((....((((.......))))))))).---))((((.(((((((.....)))))))...))))--.(((.--...))))).............. ( -27.30) >DroAna_CAF1 24111 73 - 1 CCUCCGGAUCAACGCCGUUGAUCCCCGAUGAUCCU---GCGUACUGCGUAAUGUUGGAUUAUG--------------------------CCAAAAUUUAAAU .....((((((((...))))))))...(((((((.---((((........)))).))))))).--------------------------............. ( -19.70) >consensus CCUCCGGAUCAACGGCGCUGAUCCUGCGUGAUCCU___GCGUACUGCGUAAUGUUGGAUUAUGUCCUGUGC__AGACG__UACGGCUGGCCAACUUUUAAAU .....(((((((.....))))))).(((((((((....((((........)))).)))))))))...................................... (-17.53 = -18.62 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:06 2006