Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,522,560 – 4,522,665 |
Length | 105 |
Max. P | 0.517639 |
Location | 4,522,560 – 4,522,665 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 86.64 |
Mean single sequence MFE | -12.23 |
Consensus MFE | -8.23 |
Energy contribution | -8.10 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.17 |
Mean z-score | -1.51 |
Structure conservation index | 0.67 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4522560 105 - 27905053 AUUAAUUCAUGCUAAUCUGAUGACUGAUAACCAAUUUGCUUAUUCUAUGUCAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUAGU-UCUGCACAUUUUCU .........(((....((((((((.(((((.(.....).)))))....)))))................((((.....)))).....))).-...)))........ ( -8.60) >DroSec_CAF1 22378 106 - 1 AUUUAUUCAGGCUAAUCUGAUGACUGAUAAGCAUUUUGCUUAUUCUCUGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUAGUUUCUGCACUUCUGCC .........(((.......(((((.(((((((.....)))))))....)))))..................(((...((((.......))))..)))......))) ( -14.50) >DroEre_CAF1 23137 98 - 1 AUUUAUGUAGUCUAAUCUGAUGACUGAUAAGCAUUUCGCUUAUUCUUUGUUAUAAUCACCUUUAAUCCCAACUACUCAACUUUCUUCUACUUUC--------UGUC ......(((((......(((..(..(((((((.....)))))))..)..)))(((......)))......)))))...................--------.... ( -11.60) >DroYak_CAF1 22812 106 - 1 AUUUAUUCAGGCUAAUCUGAUAACUGAUAAGCAUUUUGCUUAUUCUUGGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUACUUUCUGCACUUCUGCC ......(((((....))))).....(((((((.....)))))))(((((...(((......)))...))))).......................(((....))). ( -14.20) >consensus AUUUAUUCAGGCUAAUCUGAUGACUGAUAAGCAUUUUGCUUAUUCUUUGUUAUAAUCACCUUUAAUCCCAAGUACUCAACUUUCUUCUACUUUCUGCACUUCUGCC ...................(((((.(((((((.....)))))))....)))))..................................................... ( -8.23 = -8.10 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:05 2006