Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 802,897 – 803,006 |
Length | 109 |
Max. P | 0.589222 |
Location | 802,897 – 803,006 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -31.79 |
Energy contribution | -31.98 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.49 |
Structure conservation index | 0.79 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 802897 109 - 27905053 CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA----GGCAGCCAACAAUAGGUGGCCAAGGCAAACUUCCUGGCACAAAGGCUGGCCUUUCAGAC-------G ..((((.((((((.(((.....))).(((....)))....)))))).((----(((((((..((.....))((((.((.......)))))).....)))).)))))))))..-------. ( -38.40) >DroSec_CAF1 40796 109 - 1 CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA----GGCAGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCACAAAGACUGGCUUUUCAGAC-------G ..((((((((.((((((((.((((..(((....)))....))))....)----))).((((....(((...((....))...)))..))))....)))).))))..))))..-------. ( -34.10) >DroEre_CAF1 24421 113 - 1 CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGCCUCCGCCUGCCAACAAAAGGUGGCCAUGGCAAACUUCCUGGCGCAAGGACUGCCUUUUCAGGC-------G ....((((((.((((((.........(((....)))....))))))))))))((((((.....((((((..(((.((((..........)).)).)).)..)))))))))))-------) ( -43.62) >DroYak_CAF1 29995 120 - 1 CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGCCUCUGGCUGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCAUAAAGACUGGCUUUUCAGGCAAAUUCAG ..((((((((.((((......(((..(((....))).....((((..((((.((((..((.......))..))))))))......)))))))...)))).))))..)))).......... ( -44.70) >consensus CACUGGGGCCUGUCUGCUUAUUGCACGACUAAUGUCACUCGCAGGCGGA____GGCAGCCAACAAAAGGUGGCCAAGGCAAACUUCCUGGCACAAAGACUGGCUUUUCAGAC_______G ..((((((((.((((((((.(((...(((....))).......(((((.......)))))..))).)))).((((.((.......))))))....)))).))))..)))).......... (-31.79 = -31.98 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:17 2006