Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,510,291 – 4,510,388 |
Length | 97 |
Max. P | 0.500000 |
Location | 4,510,291 – 4,510,388 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 91.64 |
Mean single sequence MFE | -17.19 |
Consensus MFE | -12.78 |
Energy contribution | -12.78 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.74 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4510291 97 - 27905053 CCACCAAUAAAAAGGCA-ACACUUCAUAAAAUACAUAAAAAAAAAUGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCUCCGGAUCCUCGG ....((((.(((((((.-...............(((........)))(((((.........)))))))))))).))))..-......((((....)))) ( -15.50) >DroSec_CAF1 10215 92 - 1 CCACCAAUAAAAAGGCA-ACACUUCAUAAAAA-----AAAAAUAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCGCCGGAUCCUCGG ....((((.(((((((.-...((((.......-----...........))))((((......))))))))))).))))..-......((((....)))) ( -14.17) >DroSim_CAF1 10226 94 - 1 CCACCAAUAAAAAGGCA-ACACUUCAUAAAAAA---AAAAAAUGAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU-UCCCCGCCGGAUCCUCGG ....((((.(((((((.-...((((((......---.....))))))(((((.........)))))))))))).))))..-......((((....)))) ( -20.00) >DroEre_CAF1 10352 92 - 1 CCACCAAUAAAAAGGCAAACACUUCAUAAAAU------UAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUUUUCCCCUCCGGAUCCUCG- ((.((........)).................------.........(((.((((((((((..............)))))))))).))))).......- ( -18.34) >DroYak_CAF1 10358 92 - 1 CCACCAAUAAAAAGGCA-ACACUUCAUAAAAUG-----UAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUUUUCCCCGCCGGAUCCUCG- ...((........(...-.).............-----.........((..((((((((((..............))))))))))..)))).......- ( -17.94) >consensus CCACCAAUAAAAAGGCA_ACACUUCAUAAAAU_____AAAAAAAAAGGGAAGGGAAAACAACUUCCGUUUUUUCAUUGUU_UCCCCGCCGGAUCCUCGG ....((((.(((((((.....((((.......................))))((((......))))))))))).))))...(((.....)))....... (-12.78 = -12.78 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:03 2006