Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,510,138 – 4,510,242 |
Length | 104 |
Max. P | 0.891040 |
Location | 4,510,138 – 4,510,242 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -11.98 |
Energy contribution | -12.57 |
Covariance contribution | 0.58 |
Combinations/Pair | 1.07 |
Mean z-score | -2.37 |
Structure conservation index | 0.52 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.891040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4510138 104 + 27905053 AAGGGACUCACCCCAUAUGCAUAUCGCAUGG-----------AUAAAAAAAACGUGCCCUCCUGUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCUAA----CGACCCCUCGA .(((....(((((..(((((.....))))).-----------...........(((((((.......)).)))))...............)))))....)))..----(((....))). ( -25.80) >DroPse_CAF1 10286 107 + 1 AAAAAACACACCCUAUACAC---UCGUACGAG-------U--AUGUAAAAAAAGUGCCCUCCUAUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCCAAACGACGACUCCUCGA .......((((((((((.((---((....)))-------)--.)))).....((((((((.......)).))))))..............))))))............(((....))). ( -25.40) >DroEre_CAF1 10204 101 + 1 -AAGAACUCACCCCAUAUGCAUAUCGCAUGG-----------AUAAAA--AAAGUGCCCUCCUGUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCCAA----CGACUCCUCGA -.......(((((..(((((.....))))).-----------......--..((((((((.......)).))))))..............))))).........----(((....))). ( -22.20) >DroWil_CAF1 5875 91 + 1 AAAAAACACACCCCAUGU------------------------AUAUAAAAAAUAUGCCCUCAUGUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACAUAA----CGACUCCUCGA .......((((((.....------------------------((((.....))))(((((.......)).))).................))))))........----(((....))). ( -13.50) >DroAna_CAF1 8547 113 + 1 -AAAAACUCACCCCAUAUGCAUAUCACAUGAGAAGCGUGUGUAUAA-AAAAAAGUG-CCUCUUGUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCUAAA---AGACCUCUCGA -.......((((((((((((...((....))...))))))).....-.....((((-((.((.....)).))))))..............)))))..........---........... ( -26.90) >DroPer_CAF1 10264 107 + 1 AAAAAACACACCCUAUACAC---UCGUACGAG-------U--AUGUAAAAAAAGUGCCCUCCUAUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCCAAACGACGACUCCUCGA .......((((((((((.((---((....)))-------)--.)))).....((((((((.......)).))))))..............))))))............(((....))). ( -25.40) >consensus AAAAAACACACCCCAUAUGC___UCGCAUGA___________AUAAAAAAAAAGUGCCCUCCUGUUAAGUGGCGCUAAAAAUCAAAUUAAGGGUGUUUACCCAA____CGACUCCUCGA ........(((((.....((.....)).........................((((((((.......)).))))))..............)))))........................ (-11.98 = -12.57 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:02 2006