Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,506,081 – 4,506,178 |
Length | 97 |
Max. P | 0.555185 |
Location | 4,506,081 – 4,506,178 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -31.95 |
Consensus MFE | -13.34 |
Energy contribution | -14.57 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.05 |
Mean z-score | -2.31 |
Structure conservation index | 0.42 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4506081 97 - 27905053 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCAUAGGC-----------GACCUUUGAUCUAGCAUAUCGUUGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGAAAA ...............(((((((......((((.(((.(-----------((....(((((.((((......)))))))))))).))).))))..-...))))))).... ( -32.20) >DroSec_CAF1 6063 97 - 1 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCAUAGAC-----------GACCUUUGAUCUAGCAUAUCGUCGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGGAAA ..............((((((((......((((.(((.(-----------((....(((((.(((........))))))))))).))).))))..-...))))))))... ( -33.40) >DroSim_CAF1 6064 97 - 1 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGAC-----------GACCUUUGAUCUAGCAUAUCGUCGUUGAUCAUCGACUAGGGGUUU-CCUUGGCACGGAAA ..............((((((((......((((.(((.(-----------((....(((((.(((........))))))))))).))).))))..-...))))))))... ( -35.50) >DroEre_CAF1 6142 106 - 1 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGACCGGUGAUCACUGACCUAUGAUCUGGGCUAUCG---UUGAUCAUCGACUAGGGGUUUUGGUUUGCACGGAAA ..............((((((.....(..((((.(((..(((((((((.(((((((.....))))...)))---.))))))))).))).))))..).....))))))... ( -38.30) >DroYak_CAF1 6117 106 - 1 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGACCGGUGAUCACUGACCUUUGAUCUGGGCUAUCG---UUGAUCAUCGACUAAGGGUUUUGGUUUGCACGGAAA ..............((((((.....(..((((.(((..(((((((((.((((((.......)))...)))---.))))))))).))).))))..).....))))))... ( -35.40) >DroAna_CAF1 4392 80 - 1 CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCUUUGACCG-----------------------UCCAU---CGUUGAUCAUCGGCUAGGGGUUU-GG--AGGAAAAAAA ..............((...(((......((((((.(.(((-----------------------...((---(...)))...)))).)))))).)-))--.))....... ( -16.90) >consensus CAAUUGCUUGGACACCGUGCCAUAAAUUGCCCGUAGAC___________GACCUUUGAUCUAGCAUAUCG_CGUUGAUCAUCGACUAGGGGUUU_CCUUGGCACGGAAA ..............((((((........((((.(((....................(((.......)))....(((.....)))))).))))........))))))... (-13.34 = -14.57 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:55 2006