Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,503,287 – 4,503,407 |
Length | 120 |
Max. P | 0.928963 |
Location | 4,503,287 – 4,503,407 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -47.48 |
Consensus MFE | -40.04 |
Energy contribution | -40.64 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.10 |
Mean z-score | -1.73 |
Structure conservation index | 0.84 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4503287 120 - 27905053 CAUUUGGACAGCUUGGACCAGUCCAUGUCGGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGAGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAA ..((((((..(((.(..((((((((((((.....((.(((((.((((.((.(....))).)))).))).)).))...((((........)))).))))))))))))...)))).)))))) ( -44.20) >DroSec_CAF1 3269 120 - 1 CAUUUGGACAGCUUGGACCAGUCCAUGUCAGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAAUCUGGAUGUGGAUUGGGUACAGCCUCCGAA ..((((((..(((.(..((((((((((((...((((((((((.((((.((.(....))).)))).)))..)))).(....).........))).))))))))))))...)))).)))))) ( -42.60) >DroSim_CAF1 3266 120 - 1 CAUUUGGACAGCUUGGACCAGUCCAUGUCAGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAAUCUGGAUGUGGAUUGGGUACAGCCUCCGAA ..((((((..(((.(..((((((((((((...((((((((((.((((.((.(....))).)))).)))..)))).(....).........))).))))))))))))...)))).)))))) ( -42.60) >DroEre_CAF1 3266 120 - 1 CAUUUGGACAGCUUGGCCCAGUCCAUGUCGGUCGGCGCCAGGAUGCGUGUGCCAAGGACAGGCAGCCUCGGGUCGAGGGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAG ...(((((..(((..((((((((((((((..(((((.(((((.(((.(((.(....)))).))).))).))))))).((((........)))).))))))))))))))..))).))))). ( -56.30) >DroYak_CAF1 3279 120 - 1 CAUUUCGACAGCUUGGCCCAGUCCAUGUCGGUAGGAGCCAGGAUGCGUGUGCCAAGGACGGGCAGCCUCGGGUCGAGGGACACAAAUAAGUCCGGAUGUGGAUUGGGUACAGCCUCCGAA ...((((...(((..((((((((((((((.....((.(((((.(((.(((.(....)))).))).))).)).))...((((........)))).))))))))))))))..)))...)))) ( -51.70) >consensus CAUUUGGACAGCUUGGACCAGUCCAUGUCGGUGGGGGCCAGGAUGCGAGUGCCAAGGACAUGCAGCCUCGGGUCGGGGGACACAAAUAAGUCUGGAUGUGGAUUGGGUACAGCCUCCGAA ..((((((..(((.(..((((((((((((.....((.(((((.((((.((.(....))).)))).))).)).))...((((........)))).))))))))))))...)))).)))))) (-40.04 = -40.64 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006