Locus 1569

Sequence ID 3R_DroMel_CAF1
Location 4,501,188 – 4,501,283
Length 95
Max. P 0.643983
window2589

overview

Window 9

Location 4,501,188 – 4,501,283
Length 95
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 79.28
Mean single sequence MFE -23.62
Consensus MFE -15.39
Energy contribution -15.70
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -1.43
Structure conservation index 0.65
SVM decision value 0.23
SVM RNA-class probability 0.643983
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4501188 95 + 27905053
UGAUGGGCAGGGCGAUGAGAAUGAUGCGGGUGUUUUUCAGAUGGGGAAUGCCUGCAGGAGGAAAGCUUUUUAAUUCGAGAACUUGAUGAUGCAUU--
......(((((((...........(((((((((((..(....)..)))))))))))........))))......((((....))))...)))...-- ( -24.71)
>DroPse_CAF1 1197 97 + 1
UAAUGGGCAGAGCAAUGAGUAUGAGACGGGUGUUCUUCAGAUGGGGAAUGCCUGCAAGAGAAACAAAAAUUAAUAUCUGAAUUCCAAUGUCCAAUCC
...((((((.......((((....(.((((((((((((....))))))))))))).(((................)))..))))...)))))).... ( -22.89)
>DroSim_CAF1 1177 95 + 1
UGAUGGGCAGGGCGAUGAGAAUGAUGCGGGUAUUUUUCAGAUGGGGAAUGCCUGCAGGAAGAAAACUUAUUAUUUCGAGAACUUGAUGAUGCAUU--
......(((...((.((((.....(((((((((((..(....)..)))))))))))....((((........)))).....)))).)).)))...-- ( -26.00)
>DroEre_CAF1 1217 95 + 1
UGAUGGGCAGGGCGAUGAGAAUGAUGCGGGUGUUUUUCAGAUGCGGAAUGCCUGCAUGAGGAAAAUGUAUUAUUAUUAGAACUUUAUGAUGUCUG--
....((((((((...(((.(((((((((....(((((((..(((((.....))))))))))))..))))))))).)))...))).....))))).-- ( -22.20)
>DroYak_CAF1 1160 95 + 1
UGAUGGGCAGGGCGAUGAGAAUGAUGCGGGUGUUUUUCAGAUGCGGAAUGCCUGCAGGAGGAAAACUUAUUAUUUAGAGAACUUGUUAAUGCAUA--
((...((((((.......(((((((((((((((((..(....)..))))))))))..(((.....))))))))))......))))))....))..-- ( -23.02)
>DroPer_CAF1 1197 97 + 1
UAAUGGGCAGAGCAAUGAGUAUGAGACGGGUGUUCUUCAGAUGGGGAAUGCCUGCAAGAGAAACAAAAAUUAAUAUCUGAAUUCCAAUGUCCAAUCC
...((((((.......((((....(.((((((((((((....))))))))))))).(((................)))..))))...)))))).... ( -22.89)
>consensus
UGAUGGGCAGGGCGAUGAGAAUGAUGCGGGUGUUUUUCAGAUGGGGAAUGCCUGCAGGAGGAAAACUUAUUAAUAUGAGAACUUGAUGAUGCAUU__
........................(((((((((((..(....)..)))))))))))......................................... (-15.39 = -15.70 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:44 2006