Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,495,736 – 4,495,881 |
Length | 145 |
Max. P | 0.874830 |
Location | 4,495,736 – 4,495,841 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.32 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -19.62 |
Energy contribution | -19.22 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.18 |
Mean z-score | -1.70 |
Structure conservation index | 0.84 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4495736 105 - 27905053 CACAUACAUAUGUAUGUAUGUAUUUAGCAGCCCCCUCAAAAACUUUUUCGCACCCACCCUGGAAAUGGAGGGGGUCACCUUUGAAGCAACAAGUGCAAGGUGCAC .((((((((....)))))))).....((.((((((((.......((((((.........))))))..)))))))).(((((....(((.....)))))))))).. ( -31.10) >DroSec_CAF1 5525 88 - 1 CAC--------------AUGUAUUUA---ACCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCUUUGAAGCAACAAGUGCAAGGUGCAC ...--------------.........---((((((((........(((((..........)))))..))))))))((((((....(((.....)))))))))... ( -21.90) >DroSim_CAF1 5551 90 - 1 CACAU------------AUGUAUUUA---GCCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCUUUGAAGCAACAAGUGCAAGGUGCAC .....------------.........---((((((((........(((((..........)))))..))))))))((((((....(((.....)))))))))... ( -22.20) >DroEre_CAF1 5714 86 - 1 CAAA----------------UACUUA---GUCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCUCUGAAGCAACAAGUGCAAGGUGCAC ....----------------......---....................((((((((..(((...((((((......))))))...)))...)))...))))).. ( -19.10) >DroYak_CAF1 5601 86 - 1 CAAA----------------UUCUUA---GCCCCUUUCAAAACUUUUUCGCAGCCACCCUUGAAAUGGAAGGGGUCACCUUUGAAGCAACAAGUGCAAGGUGCAC ....----------------......---((((((((((......(((((.((.....)))))))))))))))))((((((....(((.....)))))))))... ( -22.30) >consensus CACA_____________AUGUAUUUA___GCCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCUUUGAAGCAACAAGUGCAAGGUGCAC .............................((((((((........(((((..........)))))..))))))))((((((....(((.....)))))))))... (-19.62 = -19.22 + -0.40)
Location | 4,495,761 – 4,495,881 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.68 |
Mean single sequence MFE | -20.12 |
Consensus MFE | -12.80 |
Energy contribution | -12.20 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.31 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4495761 120 - 27905053 UAACUAUUUUUGUUUUAUUUUCUUUUGUAAUGUUUCAAAACACAUACAUAUGUAUGUAUGUAUUUAGCAGCCCCCUCAAAAACUUUUUCGCACCCACCCUGGAAAUGGAGGGGGUCACCU ..........((((..((....(((((........))))).((((((((....))))))))))..))))((((((((.......((((((.........))))))..))))))))..... ( -25.30) >DroSec_CAF1 5550 103 - 1 UAACUGUUUUUGUUUUAUUUUCAUUUGUAAUGUUGCAAAACAC--------------AUGUAUUUA---ACCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCU ..(((((((((((..((((.........))))..)))))).))--------------).)).....---((((((((........(((((..........)))))..))))))))..... ( -21.00) >DroSim_CAF1 5576 105 - 1 UAACUGUUUUUGUUUUAUUUUCAUUUGUAAUGUUGCAAAGCACAU------------AUGUAUUUA---GCCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCU ....(((((((((..((((.........))))..)))))).))).------------.........---((((((((........(((((..........)))))..))))))))..... ( -20.60) >DroEre_CAF1 5739 95 - 1 UAACAGUUUUUAUUUUGGU------UAUUAAGUUGCAAAACAAA----------------UACUUA---GUCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCU ....(((((((.....((.------.(((((((...........----------------.)))))---))..))..))))))).....(.((((.((((......)).))))))).... ( -18.60) >DroYak_CAF1 5626 90 - 1 UAAUAGUUUUAACAAUAAA------UAAUAA-----UAAACAAA----------------UUCUUA---GCCCCUUUCAAAACUUUUUCGCAGCCACCCUUGAAAUGGAAGGGGUCACCU ...................------......-----........----------------......---((((((((((......(((((.((.....)))))))))))))))))..... ( -15.10) >consensus UAACUGUUUUUGUUUUAUUUUC_UUUGUAAUGUUGCAAAACACA_____________AUGUAUUUA___GCCCCCUCAAAAACUUUUUCGCACCCACCCUUGAAAUGGAGGGGGUCACCU .....................................................................((((((((........(((((..........)))))..))))))))..... (-12.80 = -12.20 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:40 2006