Locus 1565

Sequence ID 3R_DroMel_CAF1
Location 4,494,330 – 4,494,445
Length 115
Max. P 0.962427
window2582

overview

Window 2

Location 4,494,330 – 4,494,445
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -29.02
Consensus MFE -27.07
Energy contribution -27.55
Covariance contribution 0.48
Combinations/Pair 1.15
Mean z-score -1.48
Structure conservation index 0.93
SVM decision value 1.54
SVM RNA-class probability 0.962427
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 4494330 115 + 27905053
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUUUCUAU-UGCAUAAUUUUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUGAGUUCAAACUUGGCC
...........((((..(((((((...((((((.((((((....(-((.(......).)))....))))))..((((........))))......)))))).)))))))..)))). ( -31.80)
>DroSec_CAF1 4140 116 + 1
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUAUCUAUUUGCACGUUUUUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUGAGUUCAUACUUGGCC
.....((((((...(((...((((..((((...((((....))))))))..)))).)))..............((((........))))..))))))((..(((....)))..)). ( -29.20)
>DroSim_CAF1 4154 115 + 1
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUAUCUAU-UGCACGUUUUUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUGAGUUCUUACAUGGCC
...........((((.....((((...((((((.(((((.....(-((..........))).....)))))..((((........))))......)))))).)))).....)))). ( -26.40)
>DroEre_CAF1 4179 114 + 1
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUAUCUAU-UGCACGUU-UUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUAAGUUUAGCUUCGGUC
.......((((((..(((((((.((..(((....((((...(...-.....)..-.)))).............((((........))))..)))..)))))))))..)).)))).. ( -26.20)
>DroYak_CAF1 4230 115 + 1
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUUUCUAU-UGCACAUUUUUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUGAGUUUAGAGUCGGCC
...........((((..(((((((...((((((.((((((....(-((..........)))....))))))..((((........))))......)))))).)))))))..)))). ( -31.50)
>consensus
AAAUCCUUCGAGCCGGAUUUGAACCAGCGACCUAUGGAUAUCUAU_UGCACGUUUUUCCAACUACAGUCCACCGCUCUACCAACUGAGCUAUCGAAGGUUGAGUUCAGACUUGGCC
...........(((((.(((((((...((((((.(((((...........................)))))..((((........))))......)))))).))))))).))))). (-27.07 = -27.55 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:38 2006