Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,492,390 – 4,492,491 |
Length | 101 |
Max. P | 0.888936 |
Location | 4,492,390 – 4,492,491 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.41 |
Mean single sequence MFE | -19.57 |
Consensus MFE | -11.31 |
Energy contribution | -11.12 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.22 |
Mean z-score | -2.00 |
Structure conservation index | 0.58 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888936 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4492390 101 - 27905053 CGCCACCGGUGAAGUCCUGCGACUUCCAACUGGUACUACAAAUAGAUUUUUCUUUAAUAUACAACAUUCUUAACCAAAUAAUGUUUCUUUGCCUUACCAAA .((.((((((((((((....))))))..))))))............................((((((.((.....)).)))))).....))......... ( -15.60) >DroSec_CAF1 2189 101 - 1 CCCCACCGGUGAAGUCUUGCGACUUCCAACUGGUGCUACAAACAGAUCUUUUGUUAAUAUACAACAUUCUGAACCAAAUAAUGUUUAUUGGCCUUACCAAA ...(((((((((((((....))))))..))))))).......((((....((((......))))...))))................((((.....)))). ( -24.30) >DroSim_CAF1 2190 101 - 1 CUCCACCGGUGAAGUCUUGCGACUUCCAACUGGUGCUACAAACAGAUCUUUUGUUAAUAUAAAACAUUCUGAACCAAAUAAUGUUUAUUGGCCUUACCAAA ...(((((((((((((....))))))..))))))).......((((..((((((....))))))...))))................((((.....)))). ( -24.40) >DroEre_CAF1 2239 100 - 1 CCCCGCCGGUAAAAUCCUGCGACUUCCAACUGGUGCUACAACGAGAUUUUCCAUUAAUAUAAAACAUUUUAAA-CGAACAAUGUUUCGUUGCCUUACCAAA ...(((.((......)).))).........(((((...(((((((((.(((..((((...........)))).-.)))....)))))))))...))))).. ( -19.90) >DroYak_CAF1 2233 96 - 1 CCCCUCCGGUAAAGUCCUGCGACUUCCAACUGGUGCUAGAAUGAGUUUUUCCGUUAAUAGACAACAUUUUUA-----ACAAUGUUUCGUUGCCUUACCAAA .......(((((.(....(((((....((((.((......)).))))............((.((((((....-----..)))))))))))))))))))... ( -15.80) >DroAna_CAF1 2250 95 - 1 CUCCGCCCGUAAAGUCCUGCGACUUCCAACUGGUGCUAAAAUU------GUAAUAAGUAAUUAAUUUUUGUAAAUAGAUGAAAUUUAUAUUACUUACCACA ...((((.((.(((((....)))))...)).)))).......(------((..(((((((((((.(((..(......)..))).))).))))))))..))) ( -17.40) >consensus CCCCACCGGUAAAGUCCUGCGACUUCCAACUGGUGCUACAAACAGAUUUUUCGUUAAUAUACAACAUUCUUAACCAAAUAAUGUUUAUUUGCCUUACCAAA ...(((((((.(((((....)))))...)))))))...........................((((((...........))))))................ (-11.31 = -11.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:37 2006