Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,478,925 – 4,479,037 |
Length | 112 |
Max. P | 0.736121 |
Location | 4,478,925 – 4,479,037 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.27 |
Mean single sequence MFE | -24.39 |
Consensus MFE | -16.57 |
Energy contribution | -16.57 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.17 |
Mean z-score | -1.25 |
Structure conservation index | 0.68 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736121 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4478925 112 + 27905053 CUUCACCCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUGUUCGAAUACCAUGUAUGCC-AUAUGCUAUAUAC---CAUAUAU-CAU .(((......((((....((....)).))))(((((((.((((..((((.......)))))))).))))))).)))....(((((((..-((((...))))..---)))))))-... ( -27.00) >DroPse_CAF1 32332 113 + 1 CUUCACACUUGGCCUCCUCGUGUUUGUAGCCAACAAGUUGUCUGGCGACAACUACACACUGGACCAUCUAUUCGAAUAUCGUGUAUGCA----UUUUAAACAACAACCACUAUUAAA ....((((.(((..(((..((((((((.((((((.....)).)))).))))..))))...))))))((.....)).....)))).....----........................ ( -20.30) >DroEre_CAF1 32870 109 + 1 CUUCACGCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUGUUCGAAUACCAUGUAUGAU-AUGCUAUAUAUAU------CUAU-CUU .(((......((((....((....)).))))(((((((.((((..((((.......)))))))).))))))).)))..........(((-(((.....)))))------)...-... ( -26.30) >DroYak_CAF1 33548 110 + 1 CUUCACGCUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUAUAGUCUGGAUCACUUAUUCGAAUACCAUGUAUGCC-AUAUAAUAUAUAU-----UUUAU-GCC ......((.((((.((((((.....(((((((((.(((((((....)))))))...)).))).)))).....))).......))).)))-).((((.......-----.))))-)). ( -24.71) >DroAna_CAF1 33714 109 + 1 UUUCACCCUAGGCCUGCUCGUCUUCGUGGCCAACAAGUUGUCCGGAGAUAACUACAGUCUGGACCAUCUGUUCGAGUACCAUGUAAUUAAACCUAGGAUAAAC-------UUU-CAU ......((((((..((((((.....(((((((((.(((((((....)))))))...)).))).)))).....))))))...((....))..))))))......-------...-... ( -28.00) >DroPer_CAF1 37498 113 + 1 CUUCACACUUGGCCUCCUCGUGUUUGUAGCCAACAAGUUGUCUGGCGACAACUACACACUGGACCAUUUAUUCGAAUAUCGUGUAUGCA----UUUUAAACAACAACCACUAUUAAA ....((((.(((..(((..((((((((.((((((.....)).)))).))))..))))...)))))).......(.....))))).....----........................ ( -20.00) >consensus CUUCACACUUGGCCUACUCGUCUUCGUGGCCAACAAGUUGUCCGGGGACAACUACAGUCUGGACCACUUAUUCGAAUACCAUGUAUGCA_AU_UUAUAUAUAA______CUAU_CAU .(((....((((((....((....)).))))))..(((((((....)))))))....................)))......................................... (-16.57 = -16.57 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:33 2006