Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,471,201 – 4,471,311 |
Length | 110 |
Max. P | 0.799613 |
Location | 4,471,201 – 4,471,311 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 85.81 |
Mean single sequence MFE | -20.16 |
Consensus MFE | -15.93 |
Energy contribution | -15.93 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.79 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.799613 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4471201 110 - 27905053 AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUCUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUGACUUUGUUUCGUACAUGCAUAUAGAAACCUGAAUGGAUCU ........((((((((((((((.(.........................)))))))))))))))..((((((........)).))))(((.(((....))).)))..... ( -18.01) >DroSec_CAF1 24136 93 - 1 AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUU--UUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG---------------UGCAUAUAGAAACCUGAAUGGAUCU ........((((((((((((((.(.........--..............))))))))))))))).....(---------------(.(((.(((....))).))).)).. ( -16.80) >DroSim_CAF1 24987 95 - 1 AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG---------------UGCAUAUAGAAACCUGAAUGGAUCU ........((((((((((((((.(.........................))))))))))))))).....(---------------(.(((.(((....))).))).)).. ( -16.71) >DroEre_CAF1 23899 96 - 1 AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUU---UUU-GUGUAU--UGCAUAUUAAUUGACAAUUGUG----UGUUUCGCA----CAUAUAGAAACCUGAAUGGAUCU ......((((((((((((((((...((((....---...-.)))).--..)))))))))))))...((((----((.....))----)))).)))..((.....)).... ( -24.70) >DroYak_CAF1 25482 101 - 1 AUAAAAUCUGUCAAUUAGUAUGGCUUACAUUUUUUUUUU-GUGUAUUUUGCAUAUUAAUUGACAAUUGUG----UGUUUCGAA----CAUAUAGAAACCUGAAUGGAUCU ........((((((((((((((.(.(((((.........-)))))....))))))))))))))).(((((----(((.....)----)))))))...((.....)).... ( -24.60) >consensus AUAAAAUCUGUCAAUUAGUAUGGCUUACGUUUUUUUUUUCUUCUAUUUUGCAUAUUAAUUGACAAUCGUG____UGUUUCG_A__UGCAUAUAGAAACCUGAAUGGAUCU ........((((((((((((((.(.........................))))))))))))))).......................(((.(((....))).)))..... (-15.93 = -15.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:32 2006