Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,462,434 – 4,462,542 |
Length | 108 |
Max. P | 0.809729 |
Location | 4,462,434 – 4,462,542 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 96.85 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -25.06 |
Energy contribution | -24.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.35 |
Structure conservation index | 0.92 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4462434 108 + 27905053 CCGCAUUCGAGAAUCGACAUUGGGGAAUCAAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCAAGUGAACUUUGCACACCUUGCAGGUGGCAAAAA ((.((.(((.....)))...)).))..(((.....(....)...)))..((((...(((......)))...)))).......(((((.((((.....))))))))).. ( -26.80) >DroSec_CAF1 15368 108 + 1 CCGCAUUCGAGAAUCGACAUUGGGGAAUCGAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCAAGUGAACUUUGCACACCUUGCAGGUGGCAAAAA .(((.(((((...((.......))...)))))...(....)..)))...((((...(((......)))...)))).......(((((.((((.....))))))))).. ( -26.10) >DroSim_CAF1 15816 108 + 1 CCGCAUUCGAGAAUCGACAUUGGGGAAUCGAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCAAGUGAACUUUGCACACCUUGCAGGUGGCAAAAA .(((.(((((...((.......))...)))))...(....)..)))...((((...(((......)))...)))).......(((((.((((.....))))))))).. ( -26.10) >DroEre_CAF1 15647 108 + 1 CCACAUUCGAGAGUCGACAUUGGGGAAUCAAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCGAGUGAACUUCGCACACCUUGCAGGUGGCAAAAA ...((((((.((((((...((((....))))....(....)........)))))).........((.....))))))))......((.((((.....))))))..... ( -26.40) >DroYak_CAF1 16926 108 + 1 CCACAUUCGAGAAUCGGCAUUGAGGAAUCAAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCGAGUGAACUUUGCACACCUUGCAGGUGGCAAAAA ...((((((..(((..(((((..............(....)((((......))))......)))))..)))..))))))...(((((.((((.....))))))))).. ( -31.40) >consensus CCGCAUUCGAGAAUCGACAUUGGGGAAUCAAGAAAGGAAACGGGUGAAAUGGCUCAUAGAAAAUGCUAAUUGCCAAGUGAACUUUGCACACCUUGCAGGUGGCAAAAA ((.((.(((.....)))...)).))..(((.....(....)...)))..((((...(((......)))...)))).......(((((.((((.....))))))))).. (-25.06 = -24.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:31 2006