Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,461,340 – 4,461,500 |
Length | 160 |
Max. P | 0.933877 |
Location | 4,461,340 – 4,461,460 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -42.83 |
Consensus MFE | -27.31 |
Energy contribution | -26.63 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.40 |
Mean z-score | -1.52 |
Structure conservation index | 0.64 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.549082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4461340 120 - 27905053 ACCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUUGGUAAAGUGCUGCCCAAAGCCUAUUGUUCCAUGGUGAUUUUCACCUCCCUGCAUUUGGGUGUCCUGUUCACGAAAACCACACUGGA ..(((....(((((((((((((..(((......(((..((..(((......)))...))...))).((((.....))))))))))).)))))(((.......))).....))))..))). ( -32.60) >DroPse_CAF1 15714 120 - 1 GCCCAGUUGGUGGCCCACUUGGCUGCGGCCAGUGGGCGGGCUAAUGGCCAAGGCCUACUGCUCGAUGGUAAUCCUCACCUCGCUCCACUUGGGUUUGCUGUUCACGAAAACCACAUUGGA ((((((.(((.((((((((.(((....))))))))))((((....(((....)))....))))((.(((.......))))).).))).))))))................((.....)). ( -47.00) >DroSim_CAF1 14749 120 - 1 ACCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUUGGUCAAGUGCUGGCCAAAGUCUAUUGUUCCAUGGUGAUUUUCACCUCGCUGCAUUUGGGUGUCCUGUUCACGAAAACCACACUGGA ..(((....(((((((((((((((((((..(((((((((.....))))))..))).....))))).((((.....))))..))))).)))))(((.......))).....))))..))). ( -41.90) >DroEre_CAF1 14263 120 - 1 GCCCCAAUGGUGGCCGAAGCGGCUGGAAUUGGUUGGCCAACUGCUGGCCAAGGCCUAUAGUUCCAUGGUGAUUUUUACCUCGCUGCAUUUGGGUGUGCUGUUCACCAAAACCACACUGGA ...(((...((((.(((((((((((((((((((((((((.....))))))..)))...))))))).(((((...)))))..))))).))))((((.......))))....))))..))). ( -45.50) >DroYak_CAF1 15836 120 - 1 GCCCAAAUGGUGGCCGAAGCGGCUGGAAAUGAUGGGCCAAGUGCUGGCCAAGGCCUAUAGUUCCAUGGUGAUAUUUACUUCGCUGCAUUUGGGUGUCCUGUUCACCAAAACCACACUGGA ..(((....((((.((((((((((((((...(((((((..(.(....))..)))))))..))))).(((((...)))))..))))).))))((((.......))))....))))..))). ( -40.50) >DroPer_CAF1 17752 120 - 1 GCCCAGUUGGUGGCCCACUUGGCUACGGCCAGUGGGCGGGCUAAUGGCCAAGGCCUACUGCUCGAUGGUAAUCUUCACCUCGCUCCACUUGGGUCUGCUGUUCACGAAAACCACAUUGGA ((((((.(((.((((((((.(((....))))))))))((((....(((....)))....))))((.(((.......))))).).))).))))))................((.....)). ( -49.50) >consensus GCCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUGGGCCAACUGCUGGCCAAGGCCUAUUGUUCCAUGGUGAUUUUCACCUCGCUGCAUUUGGGUGUCCUGUUCACGAAAACCACACUGGA (((((((((..((((.....))))((((.((((.(((...............))).))))))))..((((.....))))......)))))))))................((.....)). (-27.31 = -26.63 + -0.69)
Location | 4,461,380 – 4,461,500 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -44.64 |
Consensus MFE | -22.85 |
Energy contribution | -23.30 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.22 |
Mean z-score | -2.12 |
Structure conservation index | 0.51 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.777860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4461380 120 + 27905053 AGGUGAAAAUCACCAUGGAACAAUAGGCUUUGGGCAGCACUUUACCAAUCAUUUCCAGCCGCUUUGGCCACCAUUUGGGUAACCGCGGCGAUGGCUUCGUGCCAUUCGCCAACUGGAGUC .((((.....))))...........(((((..(...((...(((((...........(((.....))).........)))))..))(((((((((.....)))).)))))..)..))))) ( -39.35) >DroPse_CAF1 15754 120 + 1 AGGUGAGGAUUACCAUCGAGCAGUAGGCCUUGGCCAUUAGCCCGCCCACUGGCCGCAGCCAAGUGGGCCACCAACUGGGCAAUCUCGGAGAUGGGUUCAUUCCCAUCGCCAGCUGCAGUC .(((((...))))).....(((((.(((....)))....((((((((((((((....))).)))))))........))))......((.((((((......)))))).)).))))).... ( -54.60) >DroSim_CAF1 14789 120 + 1 AGGUGAAAAUCACCAUGGAACAAUAGACUUUGGCCAGCACUUGACCAAUCAUUUCCAGCCGCUUUGGCCACCAUUUGGGUAACCGCGGCGAUGGCUUCGUGCCCAUCGCCAACUGGAGUC .((((.....))))...........((((.((((((((.((.((.........)).))..))..))))))(((...((....))..(((((((((.....).))))))))...))))))) ( -38.70) >DroEre_CAF1 14303 120 + 1 AGGUAAAAAUCACCAUGGAACUAUAGGCCUUGGCCAGCAGUUGGCCAACCAAUUCCAGCCGCUUCGGCCACCAUUGGGGCAACCGCGGAGAUGGCUGCGUGCCCAUCGCCAACUGUUGAA .(((.......)))...........(((....)))((((((((((....((((....((((...))))....))))(((((..(((((......))))))))))...))))))))))... ( -45.70) >DroYak_CAF1 15876 120 + 1 AAGUAAAUAUCACCAUGGAACUAUAGGCCUUGGCCAGCACUUGGCCCAUCAUUUCCAGCCGCUUCGGCCACCAUUUGGGCAACCGCGGAGAUGGCCGCGUGCCCAUCGCCAACUGUUGUC ..............((((.......(((....))).((((.(((((....((((((.((.((....))........((....))))))))))))))).)))))))).............. ( -39.20) >DroPer_CAF1 17792 120 + 1 AGGUGAAGAUUACCAUCGAGCAGUAGGCCUUGGCCAUUAGCCCGCCCACUGGCCGUAGCCAAGUGGGCCACCAACUGGGCAAUCUCGGAGAUGGCUUCAUUCCCAUCGCCAGCUGCAGUC .(((((...))))).....(((((.(((....)))....((((((((((((((....))).)))))))........))))......((.(((((........))))).)).))))).... ( -50.30) >consensus AGGUGAAAAUCACCAUGGAACAAUAGGCCUUGGCCAGCACUUGGCCAACCAUUUCCAGCCGCUUCGGCCACCAUUUGGGCAACCGCGGAGAUGGCUUCGUGCCCAUCGCCAACUGCAGUC .((((.....)))).....((.((((...(((((........................((((....(((........)))....)))).(((((........)))))))))))))).)). (-22.85 = -23.30 + 0.45)
Location | 4,461,380 – 4,461,500 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -49.22 |
Consensus MFE | -28.61 |
Energy contribution | -28.95 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.29 |
Mean z-score | -2.27 |
Structure conservation index | 0.58 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933877 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4461380 120 - 27905053 GACUCCAGUUGGCGAAUGGCACGAAGCCAUCGCCGCGGUUACCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUUGGUAAAGUGCUGCCCAAAGCCUAUUGUUCCAUGGUGAUUUUCACCU ...((((((((((((.((((.....)))))))))(((((((((.....)))))))...)))))))))......(((..((..(((......)))...))...))).((((.....)))). ( -44.90) >DroPse_CAF1 15754 120 - 1 GACUGCAGCUGGCGAUGGGAAUGAACCCAUCUCCGAGAUUGCCCAGUUGGUGGCCCACUUGGCUGCGGCCAGUGGGCGGGCUAAUGGCCAAGGCCUACUGCUCGAUGGUAAUCCUCACCU ((((((((((((.((((((......)))))).)).)).))))..))))(((((((((((.(((....))))))))))((((....(((....)))....))))............)))). ( -55.90) >DroSim_CAF1 14789 120 - 1 GACUCCAGUUGGCGAUGGGCACGAAGCCAUCGCCGCGGUUACCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUUGGUCAAGUGCUGGCCAAAGUCUAUUGUUCCAUGGUGAUUUUCACCU ((((((((((((((((((........))))))))(((((((((.....)))))))...))))))))).....(((((((.....))))))).)))...........((((.....)))). ( -50.70) >DroEre_CAF1 14303 120 - 1 UUCAACAGUUGGCGAUGGGCACGCAGCCAUCUCCGCGGUUGCCCCAAUGGUGGCCGAAGCGGCUGGAAUUGGUUGGCCAACUGCUGGCCAAGGCCUAUAGUUCCAUGGUGAUUUUUACCU .........(((..((((((...(((((..((...((((..((.....))..)))).)).)))))...(((((..((.....))..))))).))))))....))).(((((...))))). ( -46.00) >DroYak_CAF1 15876 120 - 1 GACAACAGUUGGCGAUGGGCACGCGGCCAUCUCCGCGGUUGCCCAAAUGGUGGCCGAAGCGGCUGGAAAUGAUGGGCCAAGUGCUGGCCAAGGCCUAUAGUUCCAUGGUGAUAUUUACUU ..........((.(((((.(....).))))).)).((((..((.....))..))))...((.((((((...(((((((..(.(....))..)))))))..))))).).)).......... ( -42.20) >DroPer_CAF1 17792 120 - 1 GACUGCAGCUGGCGAUGGGAAUGAAGCCAUCUCCGAGAUUGCCCAGUUGGUGGCCCACUUGGCUACGGCCAGUGGGCGGGCUAAUGGCCAAGGCCUACUGCUCGAUGGUAAUCUUCACCU ((((((((((((.(((((........))))).)).)).))))..))))(((((((((((.(((....))))))))))((((....(((....)))....))))(((....)))..)))). ( -55.60) >consensus GACUACAGUUGGCGAUGGGCACGAAGCCAUCUCCGCGGUUGCCCAAAUGGUGGCCAAAGCGGCUGGAAAUGAUGGGCCAACUGCUGGCCAAGGCCUAUUGUUCCAUGGUGAUUUUCACCU ....(((((.((((((((........))))).(((((((((((.....)))))))...))))............(((.........)))...))).))))).....((((.....)))). (-28.61 = -28.95 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:30 2006