Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,458,879 – 4,458,978 |
Length | 99 |
Max. P | 0.978126 |
Location | 4,458,879 – 4,458,978 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 73.79 |
Mean single sequence MFE | -24.66 |
Consensus MFE | -11.94 |
Energy contribution | -13.83 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.06 |
Mean z-score | -2.36 |
Structure conservation index | 0.48 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4458879 99 - 27905053 AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACAAAA-------UUCCAAUCUAUGCUCGAGGA-AAC .((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32) >DroVir_CAF1 13184 99 - 1 AUCUCUCGCUUCAGCAUUUUCCACUGACAGCUGGCGGCAUUUUAAUUGAAAGCAAUCAAUAACAACGCAC--------CCAACUCUUCCAACUUC--GACCGAAAUAUU .((..(((((((((.........)))).)))(((..((......(((((......)))))......))..--------)))..............--))..))...... ( -14.20) >DroSim_CAF1 11275 99 - 1 AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACAAAA-------UUCCAAUCUAUGCUCAAGGA-AAC .((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32) >DroEre_CAF1 10797 99 - 1 AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACCAAA-------UUCCAAUUUCUGCUUGCGGA-AUC .((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------.......(((((....))))-).. ( -30.30) >DroYak_CAF1 11013 99 - 1 AUG--CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCACCAAA-------UUCCAAUUUAUGCUUGAGGA-AAC .((--(((............)))))....((((((((((.....(((((......)))))..))))))))))......-------((((.............)))-).. ( -28.32) >DroMoj_CAF1 11711 96 - 1 AUC--UCGCUUCAGCAUUUUGCAGUGACAGCUGGCGGCAUUUUAAUUGAAAGCAAUCAAUAAAAGCGCGU---------CAACUCUUCCAGCUUA--GAAUGAAAAAUC ...--.........(((((((.(((...((.(((((((.(((((.((((......))))))))))).)))---------)).))......)))))--)))))....... ( -18.50) >consensus AUG__CCGUGUCAACUUUUUCGGCAGUCAGCUGGCGGUAUUUUAAUUGAAAGCAAUCAAUAUUAUCGCCAGCAC_AAA_______UUCCAAUUUAUGCUCGAGGA_AAC .......((....))..............((((((((((.....(((((......)))))..))))))))))..................................... (-11.94 = -13.83 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:26 2006