Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,457,794 – 4,457,889 |
Length | 95 |
Max. P | 0.958851 |
Location | 4,457,794 – 4,457,889 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.28 |
Mean single sequence MFE | -22.10 |
Consensus MFE | -13.64 |
Energy contribution | -14.07 |
Covariance contribution | 0.43 |
Combinations/Pair | 1.13 |
Mean z-score | -1.90 |
Structure conservation index | 0.62 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4457794 95 + 27905053 UUAAAGCCGCUUUGCGGCAAAAAGCCAU------------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC .....(((((...))))).....(((((------------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10) >DroSec_CAF1 9775 99 + 1 UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU--------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC .....(((((...))))).....(((((....--------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10) >DroSim_CAF1 10181 99 + 1 UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU--------------CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCCCAAUCAAAUGGC .....(((((...))))).....(((((....--------------.....(((.(....).)))..........(((.(((((...)))))))).............))))) ( -21.10) >DroEre_CAF1 9720 101 + 1 UUAAAGCCGCUUUGCGGCAAAAAGCCAGCCAUAGGCCCACGCC------------CACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCCAAUCACAUUCAUAUGGC .....(((((...))))).........(((((((((....)))------------.....(((....)))....((((.(((((...)))))))))...........)))))) ( -26.90) >DroYak_CAF1 9885 113 + 1 UUAAAGCCGCUUUGUGGCAAAAAGCCAGCCAGAAACCCACGCCCACGCACGGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCACAUUCAAAUGGC .....(((((...))))).....((((....(((......((((......))))(.(((.(((....))).....(((....)))......))).).......)))...)))) ( -24.90) >DroAna_CAF1 9615 72 + 1 UUAAAGCCGCUUUGUGGCAAACGA---------------------------ACCCCUCAAAAG-------ACAGGGGCU--AGUCGCAUUAUAGCGUAUCAAAAUCAG----- .......((((.((((((......---------------------------.(((((......-------..)))))..--.))))))....))))............----- ( -17.50) >consensus UUAAAGCCGCUUUGCGGCAAAAAGCCAUCCAU______________CCACAGGCCCACAAGAGCCAACUCACAAGGACUAUAGUCACAUUAUGUCGAAUCACAAUCAAAUGGC .....(((((...))))).....((((.................................(((....))).....(((....)))........................)))) (-13.64 = -14.07 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:25 2006