Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,456,416 – 4,456,508 |
Length | 92 |
Max. P | 0.956248 |
Location | 4,456,416 – 4,456,508 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -25.95 |
Consensus MFE | -15.71 |
Energy contribution | -16.13 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.30 |
Mean z-score | -2.12 |
Structure conservation index | 0.61 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4456416 92 + 27905053 UAUGCCCGGCCACUUGACAAAUUAAUGCACGCUAAUGCGGCACAAAUUUUGU-ACUUCAAGAGGCCGUUGAAUUUUGCGAAAUGCGCAGCG------AA ..(((.(((((.(((((((((....(((.(((....)))))).....)))).-...))))).)))))........((((.....)))))))------.. ( -29.70) >DroSec_CAF1 8400 92 + 1 UAUGCCCGGCCACUUGACAAAUUAAUGCACGCUAAUGCGGCACAAAUUUUGU-ACUUCAAGAGGCUGUUGAAUUUUGCGGAAUGCGCACAG------AA ......(((((.(((((((((....(((.(((....)))))).....)))).-...))))).)))))........((((.....))))...------.. ( -25.50) >DroSim_CAF1 8813 92 + 1 UAUGCCCGGCCACUUGACAAAUUAAUGCACGCUAAUGCGGCACAAAUUUUGU-ACUUCAAGAGGCUGUUGAAUUUUGCGGAAUGCGCACAG------AA ......(((((.(((((((((....(((.(((....)))))).....)))).-...))))).)))))........((((.....))))...------.. ( -25.50) >DroYak_CAF1 8573 92 + 1 UAUGCCCGGCCACUUGACAAAUUAAUGCACGCUAAUGCGGCACAAAUUUUGU-ACUUCAAGAGGCCGUUGAAUUUUGCAAAGUGCGCAGGG------AA ....(((((((.(((((((((....(((.(((....)))))).....)))).-...))))).)))).........(((.......))))))------.. ( -29.30) >DroAna_CAF1 8255 83 + 1 UAUUUCAGAGCACUUGACAAAUUAAUGCAGGCUAAUGCCGCACAAAUUUUCUUGCUCGAAGAGGCCACAGAAAUUUUCAGAAU---------------- ...(((.(((((...((.(((((..(((.(((....))))))..))))))).)))))(((((..(....)...))))).))).---------------- ( -19.90) >DroPer_CAF1 11012 94 + 1 UAUUUCAGGGAACUUGGCGGAUUAAUGCACGCUAAUGCCGCGCAAAUU-UGU-GCUUCAAGAGGCCUUUUAAA---GCAGAAUGCGCUUAGAAGGAAAA ..((((..((...((((((..........))))))..))(((((...(-(.(-((((.((((....)))).))---))).))))))).......)))). ( -25.80) >consensus UAUGCCCGGCCACUUGACAAAUUAAUGCACGCUAAUGCGGCACAAAUUUUGU_ACUUCAAGAGGCCGUUGAAUUUUGCAGAAUGCGCACAG______AA ......(((((.(((((((((....(((.(((....)))))).....))))).....)))).)))))................................ (-15.71 = -16.13 + 0.42)
Location | 4,456,416 – 4,456,508 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 79.58 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -17.59 |
Energy contribution | -19.57 |
Covariance contribution | 1.97 |
Combinations/Pair | 1.19 |
Mean z-score | -2.63 |
Structure conservation index | 0.65 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.956248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4456416 92 - 27905053 UU------CGCUGCGCAUUUCGCAAAAUUCAACGGCCUCUUGAAGU-ACAAAAUUUGUGCCGCAUUAGCGUGCAUUAAUUUGUCAAGUGGCCGGGCAUA ..------.((((((.....))).........(((((.(((((...-...(((((.(((((((....))).)))).))))).))))).))))))))... ( -34.20) >DroSec_CAF1 8400 92 - 1 UU------CUGUGCGCAUUCCGCAAAAUUCAACAGCCUCUUGAAGU-ACAAAAUUUGUGCCGCAUUAGCGUGCAUUAAUUUGUCAAGUGGCCGGGCAUA ..------.(((((((.....)).........(.(((.(((((...-...(((((.(((((((....))).)))).))))).))))).))).).))))) ( -28.10) >DroSim_CAF1 8813 92 - 1 UU------CUGUGCGCAUUCCGCAAAAUUCAACAGCCUCUUGAAGU-ACAAAAUUUGUGCCGCAUUAGCGUGCAUUAAUUUGUCAAGUGGCCGGGCAUA ..------.(((((((.....)).........(.(((.(((((...-...(((((.(((((((....))).)))).))))).))))).))).).))))) ( -28.10) >DroYak_CAF1 8573 92 - 1 UU------CCCUGCGCACUUUGCAAAAUUCAACGGCCUCUUGAAGU-ACAAAAUUUGUGCCGCAUUAGCGUGCAUUAAUUUGUCAAGUGGCCGGGCAUA ..------...(((((.....)).........(((((.(((((...-...(((((.(((((((....))).)))).))))).))))).))))).))).. ( -32.70) >DroAna_CAF1 8255 83 - 1 ----------------AUUCUGAAAAUUUCUGUGGCCUCUUCGAGCAAGAAAAUUUGUGCGGCAUUAGCCUGCAUUAAUUUGUCAAGUGCUCUGAAAUA ----------------.......................((((((((.(((((((.(((((((....))).)))).))))).))...))))).)))... ( -19.70) >DroPer_CAF1 11012 94 - 1 UUUUCCUUCUAAGCGCAUUCUGC---UUUAAAAGGCCUCUUGAAGC-ACA-AAUUUGCGCGGCAUUAGCGUGCAUUAAUCCGCCAAGUUCCCUGAAAUA .((((.......(((((...(((---(((((........)))))))-)..-....)))))((((((((......)))))..))).........)))).. ( -19.90) >consensus UU______CUCUGCGCAUUCCGCAAAAUUCAACGGCCUCUUGAAGU_ACAAAAUUUGUGCCGCAUUAGCGUGCAUUAAUUUGUCAAGUGGCCGGGCAUA ...........((((.....))))........(((((.(((((.......(((((.(((((((....))).)))).))))).))))).)))))...... (-17.59 = -19.57 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:24 2006