| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 4,452,120 – 4,452,239 |
| Length | 119 |
| Max. P | 0.717696 |
| Location | 4,452,120 – 4,452,239 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.61 |
| Mean single sequence MFE | -50.80 |
| Consensus MFE | -27.71 |
| Energy contribution | -27.30 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.56 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4452120 119 + 27905053 GCCGACGAAAGUUGAGCAUCUCAAAGACCGCCUCGGUGGUCACGUGGGAUUCAAGUCGUCAUCGUCGGCGGGGCAGCAGUUUUGGCGGAGUGCGAACAUCCCUGCUGUUGACGCCCACC ((((((((.(.((((..((((((..((((((....))))))...)))))))))).).....))))))))(((((((((((...((.(((((....)).)))))))))))).).)))... ( -52.20) >DroVir_CAF1 5311 119 + 1 GACGACGCAAGCUAAGCAUCUCAAAGACCGCCUCAGUGGUCACCUGGGAUGCGAGUCGUCAUCGCCGGCGCGGCAGCAGCUUUGGCGGCGUGCGCACCUCGCUGCUGCUGACGCCCACC (((((((....)...((((((((..((((((....))))))...))))))))..))))))......((((((((((((((...((..((....)).))..)))))))))).)))).... ( -61.50) >DroGri_CAF1 5543 119 + 1 GUCGACGCAAACUGAGCAUAUCGAAGACCGCCUCGGUUAUUACCUGGGAGGCCAGUCGUCAUCGUCGACGAGGUAGUAGCUUUGGCGGUGUACGCACCUCUCUGCUCCUCACCCCCACA ((((((((.......)).....((.(((.((((((((....)))...)))))..))).))...))))))((((.(((((....((.((((....)))).)))))))))))......... ( -44.40) >DroWil_CAF1 4317 119 + 1 GAAGGCGUAAGCUCAGCAUAUCCAAGACUGCCUCAGUAGUCACAUGGGACGCGAGCCGUCAUCGACGGCGAGGAAGUAGCUUUGGUGGUGUUCGCACCUCGUUACUUCUUACGCCCACA ...(((((((.(((.((...((((.((((((....))))))...))))..))..((((((...)))))))))((((((((...((((.......))))..))))))))))))))).... ( -49.70) >DroMoj_CAF1 4388 119 + 1 GCCGGCGUAAGUUGAGCAUCUCAAAGACAGCAUCGGUGGUCACGUGGGACUCGAGUCGGCAUCGUCGGCGUGGCAGCAGCUUUGGCGGUGCACGCACCUCACUGCUGCUAACCCCCACC ((((((....)))).))........(((.((....)).)))..(((((......((((((...)))))).(((((((((...(((.((((....))))))))))))))))...))))). ( -48.10) >DroAna_CAF1 4285 119 + 1 GUCGACGAAAGCUGAGCAUCUCCAAGACGGCCUCGGUGGUCACUUGGGACUCCAGUCGCCAUCGGCGGCGUGGAAGCAGCUUCGGGGGCGUUCGGACUUCCCUGCUCCUGACACCCACC ((((.((((.((((....((.(((((..((((.....)))).))))))).((((((((((...)))))).))))..))))))))((((((...((....)).))))))))))....... ( -48.90) >consensus GACGACGAAAGCUGAGCAUCUCAAAGACCGCCUCGGUGGUCACCUGGGACGCGAGUCGUCAUCGUCGGCGAGGCAGCAGCUUUGGCGGUGUACGCACCUCCCUGCUGCUGACGCCCACC ...(((....(((((((............)).))))).)))...((((......((((((...)))))).(((((((((.....(((.....)))......)))))))))...)))).. (-27.71 = -27.30 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:22 2006