Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,447,056 – 4,447,146 |
Length | 90 |
Max. P | 0.564645 |
Location | 4,447,056 – 4,447,146 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 85.26 |
Mean single sequence MFE | -22.50 |
Consensus MFE | -13.94 |
Energy contribution | -14.42 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.20 |
Mean z-score | -2.07 |
Structure conservation index | 0.62 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4447056 90 - 27905053 AGCGAAGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUA----GUAACGAGAGGGGUAAUUAGGGAUGCAGGAAGCAAUUUA .((......(((((.(((.((.(((.((...(((.((((....))))))).----....(....))).)))..)).))).))))).))...... ( -23.20) >DroSec_CAF1 1532 90 - 1 AGCGAGGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUG----GUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA .((...(.((((..((((((((((..(....(((.((((....))))))).----.....)..))))))))))..)))).).....))...... ( -25.10) >DroSim_CAF1 2494 94 - 1 AGCGAAGGAUCUUGGAUUGUUUUUGGCCAAAAGCUCCAGCUAACUGGGCUGGCUAGUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA ....((..(((((...(((((.(((((((...((.((((....))))))))))))).)))))..)))))..)).....(((.....)))..... ( -26.50) >DroEre_CAF1 1487 89 - 1 AGUGCAGAAUCUUGAAUUGUU-UUAGCCAAAAGCUCAAGUAAACUGGGCUU----AUAGCGAGAUGGAUAAUUAGGGCGGCACGAAACAAUUAA .((((....((((((.(((((-(..((...(((((((.......)))))))----...)).....))))))))))))..))))........... ( -20.70) >DroYak_CAF1 1593 90 - 1 AGCGAAGAAUCUUGAAUUGUUUUUAGCCAAAAGCUCAAGUAAACUGGGCUU----AAUACGAGAAGGAUAAUUAGGGAUGUACAAAACAAUUAA ........((((..((((((((((..(...(((((((.......)))))))----.....)..))))))))))..))))............... ( -17.00) >consensus AGCGAAGGAUCUUGGAUUGUUUUUAGCCAAAAGCUCCAGUUAACUGGGCUG____GUAACGAGAAGGAUAAUUAGGGAUGCAAGAAGCAAUUAA .((...(.((((..((((((((((..(....(((.((((....)))))))..........)..))))))))))..)))).).....))...... (-13.94 = -14.42 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:20 2006