Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 799,043 – 799,154 |
Length | 111 |
Max. P | 0.894746 |
Location | 799,043 – 799,154 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 64.60 |
Mean single sequence MFE | -17.82 |
Consensus MFE | -8.59 |
Energy contribution | -8.65 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.18 |
Mean z-score | -1.83 |
Structure conservation index | 0.48 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 799043 111 + 27905053 UCUAGCAAGGUAAU----UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUGUUCCAGUAUAUUAUUUGAAUAUCUCCCUGCAUGUAUUAUGCGCUCAAAAUUAUACCUC----UA-UUUUU ...(((.(((((.(----(((((((((((..((((((((....))))))))...))).))))).)))).)))))....(((((...))))))))..............----..-..... ( -19.10) >DroSec_CAF1 37050 97 + 1 -------------U----UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUGUACCAGUAAAUUAUUUGAAUAUCUCCUUGCAUAUUUAUCGCGCUCAAAAUUAUACUUC----UU-UUUU- -------------.----.....(((((((.((((((((....))))))))..............((((((((.....).))))))).........))))))).....----..-....- ( -12.80) >DroEre_CAF1 20705 108 + 1 UCUCACAAGUUACUUGCCUAAUAAAAACUGCAUAGCAUACUUGUAUGCUAUUUCAGUAAAUGCUUCGAAA-------UGCAUAUUCAUUGCGCCCAAACGUAUACCUC----AGUUUUA- .....((((...)))).......(((((((.((((((((....))))))))....(((.((((.......-------.))))......((((......)))))))..)----)))))).- ( -19.90) >DroYak_CAF1 26591 108 + 1 UCAUGUAAGGUACUUA----------UUUUCAUAGCAUACUUGUCUGCUAUUUCGGCAAAUGUUUUGAAUUUC-CCUUGUAUAUUCAUUGCGCCUAAACGAGUACUUCUCCCCACUUUU- ....(..(((((((..----------(((..((((((........))))))...(((....((..(((((...-........)))))..))))).)))..)))))))..).........- ( -19.50) >consensus UCU_GCAAGGUACU____UAAUAAUAAUUUCAUAGCAUACUUGUAUGCUAUUCCAGUAAAUGAUUUGAAUAUC_CCUUGCAUAUUCAUUGCGCCCAAAAGUAUACCUC____UA_UUUU_ ...............................((((((((....))))))))...........................(((.......)))............................. ( -8.59 = -8.65 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:06 2006