Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,444,760 – 4,444,852 |
Length | 92 |
Max. P | 0.747424 |
Location | 4,444,760 – 4,444,852 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.19 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -25.39 |
Energy contribution | -25.67 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.18 |
Mean z-score | -2.07 |
Structure conservation index | 0.83 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4444760 92 - 27905053 GUGCCCUGAGAUUUGGGCGCGGGAUUUGUGAAUCCAGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG ((((((........)))))).(((((..((...((((...)))).....))..))))).......((.(((((((.....))))))).)).. ( -33.20) >DroSec_CAF1 36223 92 - 1 GUGCCCUGAGAUUUGGGCGCGGGAUUUGUGAAUCCGGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG ((((((........)))))).(((((..((...((((...)))).....))..))))).......((.(((((((.....))))))).)).. ( -32.50) >DroSim_CAF1 38992 90 - 1 GUGCCC-GAGAUUUGGGCGCGGGAU-UGUGAAUCCAGAAUCUGGUCGAACAUGAAUCUGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG ((((((-((...)))))))).((((-(.((....)).)))))(((((.(((......))).)))))(.(((((((.....))))))).)... ( -31.70) >DroEre_CAF1 37362 90 - 1 GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG--UCCAGAAUCUGGUCGAACAUGAAUCCGUGUAGCCGCUGGGAAAAGGAAUUUCUUAACGAG ((((((........)))))).(((((..((--(((((...))))....)))..))))).......((.(((((((.....))))))).)).. ( -31.10) >DroYak_CAF1 36977 90 - 1 GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG--UCCAGAAUCUGGUGGAACAUGAAUCCAUAUUGCCGCUGGGAAAAGGAAUUUCUUAACGAG ((((((........)))))).(((((..((--((((........))).)))..))))).......((.(((((((.....))))))).)).. ( -32.00) >DroAna_CAF1 42803 90 - 1 GUGGCCUGAGAUUUUGGUGCGGGAUUUGUG--UCCGAAAUCUGGUCGAACAUGAAUACGUAUUGCUGCAGGGAAAAGGAAUUCCUUAACGAA ....((((((.....((((((..(((..((--(.(((.......))).)))..))).)))))).)).))))...((((....))))...... ( -22.90) >consensus GUGCCCUGAGAUUUGGGCGCGGGAUUUGUG__UCCAGAAUCUGGUCGAACAUGAAUCCGUAUGGCCGCUGGGAAAAGGAAUUUCCUAACGAG ((((((........)))))).(((((((((...((((...)))).....))))))))).......((.(((((((.....))))))).)).. (-25.39 = -25.67 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:18 2006