Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 4,426,332 – 4,426,489 |
Length | 157 |
Max. P | 0.999868 |
Location | 4,426,332 – 4,426,449 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 94.19 |
Mean single sequence MFE | -33.90 |
Consensus MFE | -30.40 |
Energy contribution | -30.68 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -2.88 |
Structure conservation index | 0.90 |
SVM decision value | 4.31 |
SVM RNA-class probability | 0.999868 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4426332 117 + 27905053 AAAUCACAUCUGUUUAUUUGGGCCUUGCUGAGAUUGUGCAAUGGCAUUGCUUGUUUUGUCCAACCAAAAUCUCCGGUGGCAAACAUGAGCAACAAUUUCAGGAUACCAGAAGCCACA ................(((((....(.((((((((((((....))..((((..(((((.(((.((.........))))))))).)..)))))))))))))).)..)))))....... ( -32.00) >DroSec_CAF1 27188 117 + 1 AAAUCACUUCUGUUUAUUUUGGCCUUGUUGAGAUUGUGCAAUGGCACUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAAAAAUUUCAGGAUACCAGAAGCCACA ......((((((..((((((((((((((.........)))).)))..((((..(....(((((((.........)))))))...)..)))).......))))))).))))))..... ( -34.40) >DroSim_CAF1 29678 117 + 1 AAAUCACUUCUGUUUAUUUUGGCCUUGUUGAGAUUGUGCAAUGGCACUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAACAAUUUCAGGAUAGUAGAAGCCACA ......((((((((.(((((((..(((((......((((....)))).(((..(....(((((((.........)))))))...)..))))))))..)))))))))))))))..... ( -33.60) >DroEre_CAF1 27379 117 + 1 AAAUCACUUCUGUUUGUUUUGGCCUUGUUGAGAUUGUGCAAUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUAAGCAACAGUUUCAGGAUACCAGAAGCCACA ......((((((..((((((((((((((.........)))).))).((((((((....(((((((.........)))))))...))))))))......))))))).))))))..... ( -36.00) >DroYak_CAF1 27632 117 + 1 AAAUCACUUCUGUUUAUUUUGGCCUUGUUGAGAACGUGCAAUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUAAGCAACAAUCUCAGGAUACCAAAAGCCACA ...........((...((((((...(.((((((..((((....))))(((((((....(((((((.........)))))))...)))))))....)))))).)..))))))...)). ( -33.50) >consensus AAAUCACUUCUGUUUAUUUUGGCCUUGUUGAGAUUGUGCAAUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAACAAUUUCAGGAUACCAGAAGCCACA ......((((((..((((((((((((((.........)))).)))..(((((((....(((((((.........)))))))...))))))).......))))))).))))))..... (-30.40 = -30.68 + 0.28)
Location | 4,426,332 – 4,426,449 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 94.19 |
Mean single sequence MFE | -31.66 |
Consensus MFE | -27.54 |
Energy contribution | -28.14 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -1.99 |
Structure conservation index | 0.87 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.991013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4426332 117 - 27905053 UGUGGCUUCUGGUAUCCUGAAAUUGUUGCUCAUGUUUGCCACCGGAGAUUUUGGUUGGACAAAACAAGCAAUGCCAUUGCACAAUCUCAGCAAGGCCCAAAUAAACAGAUGUGAUUU .((.((.((((.............((((((..(((((.((((((((...))))).)))...)))))))))))(((.((((.........))))))).........)))).)).)).. ( -29.60) >DroSec_CAF1 27188 117 - 1 UGUGGCUUCUGGUAUCCUGAAAUUUUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAGUGCCAUUGCACAAUCUCAACAAGGCCAAAAUAAACAGAAGUGAUUU .((.(((((((...............((((..((((((((((((((...))))))))))...))))))))((((....)))).......................))))))).)).. ( -32.00) >DroSim_CAF1 29678 117 - 1 UGUGGCUUCUACUAUCCUGAAAUUGUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAGUGCCAUUGCACAAUCUCAACAAGGCCAAAAUAAACAGAAGUGAUUU .((.((((((..(((..((...((((((((..((((((((((((((...))))))))))...))))))).((((....))))......)))))...))..)))...)))))).)).. ( -30.80) >DroEre_CAF1 27379 117 - 1 UGUGGCUUCUGGUAUCCUGAAACUGUUGCUUAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAUUGCACAAUCUCAACAAGGCCAAAACAAACAGAAGUGAUUU .((.(((((((.............((((((..((((((((((((((...))))))))))...))))))))))(((.(((...........)))))).........))))))).)).. ( -32.70) >DroYak_CAF1 27632 117 - 1 UGUGGCUUUUGGUAUCCUGAGAUUGUUGCUUAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAUUGCACGUUCUCAACAAGGCCAAAAUAAACAGAAGUGAUUU (((...(((((((....(((((..((((((..((((((((((((((...))))))))))...))))))))))((....))....))))).....)))))))...))).......... ( -33.20) >consensus UGUGGCUUCUGGUAUCCUGAAAUUGUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAUUGCACAAUCUCAACAAGGCCAAAAUAAACAGAAGUGAUUU .((.(((((((.............((((((..((((((((((((((...))))))))))...))))))))))(((.(((...........)))))).........))))))).)).. (-27.54 = -28.14 + 0.60)
Location | 4,426,372 – 4,426,489 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -27.22 |
Consensus MFE | -23.34 |
Energy contribution | -23.10 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.16 |
Mean z-score | -2.04 |
Structure conservation index | 0.86 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4426372 117 + 27905053 AUGGCAUUGCUUGUUUUGUCCAACCAAAAUCUCCGGUGGCAAACAUGAGCAACAAUUUCAGGAUACCAGAAGCCACAAUGAGAAAAGGCAUAUCAUGUAAAUUACAUCUCCACAUGU .((((.(((((..(((((.(((.((.........))))))))).)..)))))....(((.((...)).)))))))....((((....((((...))))........))))....... ( -23.00) >DroSec_CAF1 27228 117 + 1 AUGGCACUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAAAAAUUUCAGGAUACCAGAAGCCACAAUGAGAAAAUGCAUAUCAUGUAAAUUACAUCUCCAUAUGC .((((..((((..(....(((((((.........)))))))...)..)))).....(((.((...)).)))))))............((((((.(((((...)))))....)))))) ( -28.10) >DroSim_CAF1 29718 117 + 1 AUGGCACUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAACAAUUUCAGGAUAGUAGAAGCCACAAUGAGAAAAUGCAUAUCAUGUAAAUUUCAUCUCCAUAUGC .((((..((((..(....(((((((.........)))))))...)..))))((.(((....))).))....))))..((((((...(((((...)))))..)))))).......... ( -26.20) >DroEre_CAF1 27419 117 + 1 AUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUAAGCAACAGUUUCAGGAUACCAGAAGCCACAAUGGGAAAAUGCAUAUCGUGUAAAUUACAUUUCCAUAUGU .((((.((((((((....(((((((.........)))))))...))))))))....(((.((...)).)))))))..(((((((..(((((...))))).......))))))).... ( -30.10) >DroYak_CAF1 27672 117 + 1 AUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUAAGCAACAAUCUCAGGAUACCAAAAGCCACAAUGGGAAAAUGCAUAUCGUGUAAAUUACAUCUCCAUAUGU .((((.((((((((....(((((((.........)))))))...))))))))..(((....))).......))))............((((((.(((((...)))))....)))))) ( -28.70) >consensus AUGGCAUUGCUUGUUUUGUGCAACCAAAAUCUCCGGUUGCAAACAUGAGCAACAAUUUCAGGAUACCAGAAGCCACAAUGAGAAAAUGCAUAUCAUGUAAAUUACAUCUCCAUAUGU .((((..(((((((....(((((((.........)))))))...)))))))...(((....))).......))))............((((((.(((((...)))))....)))))) (-23.34 = -23.10 + -0.24)
Location | 4,426,372 – 4,426,489 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -30.78 |
Consensus MFE | -26.70 |
Energy contribution | -26.94 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 1.69 |
SVM RNA-class probability | 0.972466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 4426372 117 - 27905053 ACAUGUGGAGAUGUAAUUUACAUGAUAUGCCUUUUCUCAUUGUGGCUUCUGGUAUCCUGAAAUUGUUGCUCAUGUUUGCCACCGGAGAUUUUGGUUGGACAAAACAAGCAAUGCCAU .((((((((.......)))))))).................((((((((.((...)).)))...((((((..(((((.((((((((...))))).)))...)))))))))))))))) ( -30.00) >DroSec_CAF1 27228 117 - 1 GCAUAUGGAGAUGUAAUUUACAUGAUAUGCAUUUUCUCAUUGUGGCUUCUGGUAUCCUGAAAUUUUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAGUGCCAU (((...((((((((((((.....))).)))))))))....)))((((((.((...)).)))....(((((..((((((((((((((...))))))))))...))))))))).))).. ( -31.50) >DroSim_CAF1 29718 117 - 1 GCAUAUGGAGAUGAAAUUUACAUGAUAUGCAUUUUCUCAUUGUGGCUUCUACUAUCCUGAAAUUGUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAGUGCCAU ....((((...((......((((((...(((.((((.....((((...))))......)))).)))...)))))).((((((((((...)))))))))).........))...)))) ( -28.20) >DroEre_CAF1 27419 117 - 1 ACAUAUGGAAAUGUAAUUUACACGAUAUGCAUUUUCCCAUUGUGGCUUCUGGUAUCCUGAAACUGUUGCUUAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAU ......((((((((((((.....))).))))))))).....((((((((.((...)).)))...((((((..((((((((((((((...))))))))))...))))))))))))))) ( -32.00) >DroYak_CAF1 27672 117 - 1 ACAUAUGGAGAUGUAAUUUACACGAUAUGCAUUUUCCCAUUGUGGCUUUUGGUAUCCUGAGAUUGUUGCUUAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAU ......((((((((((((.....))).))))))))).....((((((((..(....)..)))..((((((..((((((((((((((...))))))))))...))))))))))))))) ( -32.20) >consensus ACAUAUGGAGAUGUAAUUUACAUGAUAUGCAUUUUCUCAUUGUGGCUUCUGGUAUCCUGAAAUUGUUGCUCAUGUUUGCAACCGGAGAUUUUGGUUGCACAAAACAAGCAAUGCCAU (((...((((((((((((.....))).)))))))))....)))((((((.(.....).)))...((((((..((((((((((((((...))))))))))...))))))))))))).. (-26.70 = -26.94 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:17 2006